Evidence map›Paper›PMID 31888486›Full record

ArticleBMC plant biology2019

Colonisation of Oncidium orchid roots by the endophyte Piriformospora indica restricts Erwinia chrysanthemi infection, stimulates accumulation of NBS-LRR resistance gene transcripts and represses their targeting micro-RNAs in leaves.

Wei Ye, Jinlan Jiang, Yuling Lin, Kai-Wun Yeh, Zhongxiong Lai, Xuming Xu, Ralf Oelmüller

Open access · goldAbstract read
In one paragraph

Article in BMC plant biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
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  3. Unveiling the rhizosphere microbiome ofFrontiers in microbiology · 2025
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  5. Research Progress ofJournal of fungi (Basel, Switzerland) · 2023
    Review
  6. Article
  7. Review
  8. Article
  9. Threat at One End of the Plant: What Travels to Inform the Other Parts?International journal of molecular sciences · 2021
    Review
  10. Article
  11. Plant signaling & behavior · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Wei YeSanming Academy of Agricultural Sciences, Sanming, Fujian, China. yewei922@qq.com.
Jinlan JiangSanming Academy of Agricultural Sciences, Sanming, Fujian, China.
Yuling LinInstitute of Horticultural Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, Fujian, China.
Kai-Wun YehMatthias-Schleiden-Institute, Plant Physiology, Friedrich Schiller University Jena, Jena, Germany.
Zhongxiong LaiInstitute of Horticultural Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, Fujian, China.
Xuming XuSanming Academy of Agricultural Sciences, Sanming, Fujian, China.
Ralf OelmüllerInstitute of Horticultural Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, Fujian, China. b7oera@uni-jena.de.
Fujian Agriculture and Forestry University · CNSanming Agricultural Science Research Institute · CNFriedrich Schiller University Jena · DE

Funding

Fujian Provincial Department of Science and Technology 2014J01382Young Scientists Fund 31501802
6 · The paper itself

Abstract

backgroundErwinia chrysanthemi (Ec) is a destructive pathogen which causes soft-rot diseases in diverse plant species including orchids. We investigated whether colonization of Oncidium roots by the endophytic fungus Piriformospora indica (Pi) restricts Ec-induced disease development in leaves, and whether this might be related to the regulation of nucleotide binding site-leucine rich repeat (NBS-LRR) Resistance (R) genes.

resultsRoot colonization of Oncidium stackings by Pi restricts progression of Ec-induced disease development in the leaves. Since Pi does not inhibit Ec growth on agar plates, we tested whether NBS-LRR R gene transcripts and the levels of their potential target miRNAs in Oncidium leaves might be regulated by Pi. Using bioinformatic tools, we first identified NBS-LRR R gene sequences from Oncidium, which are predicted to be targets of miRNAs. Among them, the expression of two R genes was repressed and the accumulation of several regulatory miRNA stimulated by Ec in the leaves of Oncidium plants. This correlated with the progression of disease development, jasmonic and salicylic acid accumulation, ethylene synthesis and H

conclusionBased on these data we propose that Pi controls the levels of NBS-LRR R mRNAs and their target miRNAs in leaves. This regulatory circuit correlates with the protection of Oncidium plants against Ec infection, and molecular and biochemical investigations will demonstrate in the future whether, and if so, to what extent these two observations are related to each other.

Indexed as

Genes, PlantBasidiomycotaDickeya chrysanthemiEndophytesMicroRNAsOrchidaceaePlant DiseasesPlant LeavesPlant RootsRNA, PlantMicroRNAsRNA, PlantErwinia chrysanthemimicroRNAOncidiumPiriformospora indicaResistance gene

Identifiers

PMID31888486
PMCPMC6937650
OpenAlexW2998308896

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.