Evidence map›Paper›PMID 31887619›Full record

ArticleOral oncology2020

Transfer RNA methyltransferase gene NSUN2 mRNA expression modifies the effect of T cell activation score on patient survival in head and neck squamous carcinoma.

Lingeng Lu, Stephen G Gaffney, Vincent L Cannataro, Jeffrey Townsend

Open access · greenAbstract read
In one paragraph

Article in Oral oncology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 31 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. NSUN2/ALYREF axis-driven mCancer immunology, immunotherapy : CII · 2025
    Article
  6. International journal of medical sciences · 2025
    Article
  7. Article
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  9. Review
  10. Review
  11. Review
  12. Review
  13. Review
  14. Biological roles of RNA mBiomarker research · 2022
    Review
  15. RNAME: A comprehensive database of RNA modification enzymes.Computational and structural biotechnology journal · 2022
    Article
  16. Article
  17. Article
  18. Review
  19. Article
  20. The role of RNA mInternational journal of biological sciences · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Lingeng LuDepartment of Chronic Disease Epidemiology, Yale School of Public Health, School of Medicine, Center for Biomedical Data Science, Yale Cancer Center, Yale University, 60 College Street, New Haven, CT 06520-8034, USA. Electronic address: lingeng.lu@yale.edu.
Stephen G GaffneyDepartment of Biostatistics, Yale School of Public Health, Yale University, New Haven, CT, 06520, USA.
Vincent L CannataroDepartment of Biostatistics, Yale School of Public Health, Yale University, New Haven, CT, 06520, USA.
Jeffrey TownsendDepartment of Biostatistics, Yale School of Public Health, Yale University, New Haven, CT, 06520, USA.
Yale University · USYale Cancer Center · US

Funding

Yale SPORE in Lung Cancer (YSILC): The Biology and Personalized Treatment of Lung CancerP50CA196530 · NCI · YALE UNIVERSITY · PI Shuangge Ma · 2015 to 2026
$31.1M
Yale Cancer Biology Training GrantT32CA193200 · NCI · YALE UNIVERSITY · PI PETER M GLAZER, Qin Yan · 2016 to 2026
$3.6M
NCI NIH HHS P50 CA196530NCI NIH HHS T32 CA193200
6 · The paper itself

Abstract

objectivesTo investigate how T-cell activation interacts with NSUN2 to influence HNSCC patient survival. MATERIALS AND

methodsThe relationships between T-cell activation status (Activation, Intermediate, and Exhaustion), NSUN2 expression, and patient survival were evaluated using Kaplan-Meier survival curves and multivariate Cox regression models in a public dataset with 520 HNSCC patients. HPV status was determined based on a VirusScan analysis of RNA-seq data.

resultsAmong the patients with high NSUN2 expression, the Activation group exhibited longer survival than the Exhaustion group (trend P = 0.056). Adjusted hazards ratios (HRs) were 0.77 (95% CI: 0.49-1.19) for the Intermediate vs Exhaustion, and 0.61 (0.36-1.03) for Activation vs. Exhaustion. In contrast, there is a positive association between T-cell activation score and mortality in the patients with low NSUN2 expression (trend P = 0.016). The adjusted HRs were 1.97 (1.12-3.47) for the Intermediate vs Exhaustion, and 2.06 (1.16-3.68) for the Activation vs Exhaustion. In multivariate cox models with or without HPV status, the interaction between T-cell activation status and NSUN2 expression was statistically significant (P = 0.004 for with HPV status, and P = 0.002 for without, respectively). When not controlling for NSUN2 expression, there was no significant association between T-cell activation score and patient mortality (P = 0.84).

conclusionsAn interaction between NSUN2 expression and T-cell activation status affects patient survival in HNSCC regardless of HPV status, suggesting that NSUN2 is a potential precision marker for immune-checkpoint blockade, and a potential therapeutic target.

Indexed as

Gene Expression Regulation, NeoplasticAdultAgedAged, 80 and overBiomarkersFemaleHumansKaplan-Meier EstimateLymphocyte ActivationMaleMethyltransferasesMiddle AgedNeoplasm GradingNeoplasm StagingPrognosisProportional Hazards ModelsBiomarkersMethyltransferasesNSUN2 protein, humanHead and neck squamous carcinomaNSUN2PrognosisT-cell activation score

Identifiers

PMID31887619
PMCPMC7273869
OpenAlexW2997630135

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.