Evidence map›Paper›PMID 31887189›Full record

ArticlePloS one2019

Important gene-gene interaction of TNF-α and VDR on osteoporosis in community-dwelling elders.

Li-Na Liao, Chia-Ing Li, Fang-Yang Wu, Chuan-Wei Yang, Chih-Hsueh Lin, Chiu-Shong Liu, Wen-Yuan Lin, Tsai-Chung Li, Cheng-Chieh Lin

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed, 1 pooled it
0.4field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 1 synthesis or guideline pooled it, 4 citations in OpenAlex.

  1. The role of TaqI, ApaI and BsmI polymorphisms of VDR gene in lumbar spine pathologies: systematic review and meta-analysis.European spine journal : official publication of the European Spine Society, the European Spinal Deformity Society, and the European Section of the Cervical Spine Research Society · 2021
    Pooled it
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Li-Na LiaoDepartment of Public Health, College of Public Health, China Medical University, Taichung, Taiwan.
Chia-Ing LiDepartment of Medical Research, China Medical University Hospital, Taichung, Taiwan.
Fang-Yang WuDepartment of Public Health, College of Public Health, China Medical University, Taichung, Taiwan.
Chuan-Wei YangDepartment of Medical Research, China Medical University Hospital, Taichung, Taiwan.
Chih-Hsueh LinSchool of Medicine, College of Medicine, China Medical University, Taichung, Taiwan.
Chiu-Shong LiuDepartment of Medical Research, China Medical University Hospital, Taichung, Taiwan.
Wen-Yuan LinSchool of Medicine, College of Medicine, China Medical University, Taichung, Taiwan.
Tsai-Chung LiDepartment of Public Health, College of Public Health, China Medical University, Taichung, Taiwan.
Cheng-Chieh LinDepartment of Medical Research, China Medical University Hospital, Taichung, Taiwan.ORCID 0000-0002-9625-6216
China Medical University · TWAsia University · TW

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Gene effects on osteoporosis have been studied separately and may have been masked by gene-gene and gene-environment interactions. We evaluated gene-gene and gene-physical activity interactions of the variants of tumor necrosis factor-α (TNF-α) and vitamin D receptor (VDR) genes on osteoporosis. A total of 472 elders were included. Seven variants (TNF-α: rs1799964, rs1800629, rs3093662; VDR: rs7975232, rs1544410, rs2239185, rs3782905) were genotyped. Bone mineral densities of the lumbar spine, femoral neck, and total hip were measured by dual-energy X-ray absorptiometry. Predictive models' ability to discriminate osteoporosis status was evaluated by areas under the receiver operating characteristics (AUROC) curve. After multivariable adjustment, significant interactions of TNF-α rs1800629 and VDR rs3782905 were observed on overall and lumbar spine osteoporosis. In elderly women, we found that those carrying the CG/CC genotype of VDR rs3782905 were significantly associated with increased odds of overall osteoporosis compared with those carrying the GG genotype of VDR rs3782905 among those carrying TNF-α rs1800629 GG genotype. The adjusted odds ratios (ORs) for VDR rs3782905 CG/CC genotype in elderly women carrying TNF-α rs1800629 AG/AA and GG genotypes were 0.1 (0.01, 0.98) and 3.54 (1.51, 8.30), respectively. We observed significant differences in AUROCs between the model with traditional covariates plus variants and their interaction term and the model with traditional covariates only (AUROCs: 0.77 and 0.81; p = 0.028). Although the sample size of this study may have been relatively small, our results suggest that the interaction of the CG/CC genotype of VDR rs3782905 with TNF-α rs1800629 GG genotype was associated with increased odds of overall and lumbar spine osteoporosis in elderly women.

Indexed as

Epistasis, GeneticAgedAged, 80 and overArea Under CurveBone DensityFemaleGenetic VariationGenotypeHumansIndependent LivingOsteoporosisPolymorphism, Single NucleotideReceptors, CalcitriolROC CurveTumor Necrosis Factor-alphaReceptors, CalcitriolTumor Necrosis Factor-alphaVDR protein, human

Identifiers

PMID31887189
PMCPMC6936796
OpenAlexW2996888846

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.