Evidence map›Paper›PMID 31886423›Full record

ArticleClinical and translational radiation oncology2020

Stability analysis of CT radiomic features with respect to segmentation variation in oropharyngeal cancer.

Rongjie Liu, Hesham Elhalawani, Abdallah Sherif Radwan Mohamed, Baher Elgohari, Laurence Court, Hongtu Zhu, Clifton David Fuller

Abstract read
In one paragraph

Article in Clinical and translational radiation oncology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

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3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 1 synthesis or guideline pooled it.

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4 · The record

Corrections and comments

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5 · Who and what money

Authors and funding

7 authors.

Rongjie LiuDepartment of Statistics, Rice University, Houston, TX 77005, USA.
Hesham ElhalawaniDepartment of Radiation Oncology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA.
Abdallah Sherif Radwan MohamedDepartment of Radiation Oncology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA.
Baher ElgohariDepartment of Radiation Oncology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA.
Laurence CourtMD Anderson UTHealth Graduate School of Biomedical Sciences, Houston, TX 77030, USA.
Hongtu ZhuDepartment of Biostatistics, The University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA.
Clifton David FullerDepartment of Radiation Oncology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA.

Funding

Fellow and Resident Radiation Oncology iNtensive Training in Imaging and Informatics to Empower Research Careers (FRONTI2ER)R25EB025787 · NIBIB · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI DAS, PRAJNAN, FULLER, CLIFTON DAVID · 2018 to 2022
$535k
6 · The paper itself

Abstract

introductionAccurate segmentation of tumors and quantification of tumor features are important for cancer detection, diagnosis, monitoring, and planning therapeutic intervention. Due to inherent noise components in multi-parametric imaging and inter-observer and intra-observer variations, it is common that various segmentation methods may produce large segmentation errors in tumor volumes and their associated radiomic features. The purpose of this study is to carry out the stability analysis for radiomic features with respect to segmentation variation in oropharyngeal cancer (OPC).

methodsIn this study, 436 contrast-enhanced computed tomography (CT) axial images were collected from patients with OPC. In order to derive various segmentations of tumor volumes, two additional segmentations were obtained via resizing the original segmented regions of interest (ROIs) based on their geometric information on the boundary. For three ROI image groups, we calculated 109 radiomic features. Then, a logistic regression model was built to investigate the correlation between the radiomic features extracted from GTVp and the response to chemotherapy and radiation in terms of overall survival (OS). Finally, in order to evaluate the stability of each feature with respect to segmentation results, based on the prediction probabilities, we assessed the inter-rater reliability and reproducibility by calculating the intra-class correlation coefficients (ICC) and concordance correlation coefficients (CCC).

resultsMost radiomic features in this study varied a lot when the ROIs were not well segmented. For both the representation agreement and predictive agreement, the ICC and CCC were below 0.5 for all the features. We still found some robust features with relatively high ICC and CCC compared to most features. For example, 25percentile (ICC = 0.38, CCC = 0.37 in representation agreement and ICC = CCC = 0.27 in predictive agreement) is a quantile based feature, which is robust to the extremely high or low values; and Hu_1_std (ICC = 0.31, CCC = 0.31 in representation agreement) is a feature calculated based on the first Hu moment, which is invariant to the transformation of ROIs.

conclusionIn OPC studies, the tumor segmentation variation affects the radiomic features from CT images in terms of both representation and prediction. Some features that are robust to the extreme values or invariant to the transformation of ROIs may be treated as radiomic markers to assist with OPC treatment monitoring and prognostic prediction.

Indexed as

00-0199-00Oropharyngeal cancerRadiomic featuresStability analysisTumor segmentation

Identifiers

PMID31886423
PMCPMC6920497

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.