Evidence map›Paper›PMID 31885873›Full record

ArticleNPJ biofilms and microbiomes

Comparison of Japanese and Indian intestinal microbiota shows diet-dependent interaction between bacteria and fungi.

Siddhika Pareek, Takashi Kurakawa, Bhabatosh Das, Daisuke Motooka, Shuuichi Nakaya, Temsunaro Rongsen-Chandola, Nidhi Goyal, Hisako Kayama, Dylan Dodd, Ryu Okumura and 10 more

Open access · goldAbstract readComparative Study
In one paragraph

Article in NPJ biofilms and microbiomes. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers.

0numbers the graph read from it
0cells of the map it votes in
51citing papers in PubMed
4.5field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

51 citing papers in PubMed, 96 citations in OpenAlex.

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  12. Deciphering microbiome and fungi-bacteria interactions in chronic wound infections using metagenomic sequencing.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2024
    Article
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  16. Review
  17. The curious case ofGut microbes · 2023
    Review
  18. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 8 institutions in 3 countries.

Siddhika Pareek *1Department of Microbiology and Immunology, Graduate School of Medicine, Osaka University, Suita, Osaka, 565-0871 Japan.
Takashi Kurakawa *1Department of Microbiology and Immunology, Graduate School of Medicine, Osaka University, Suita, Osaka, 565-0871 Japan.
Bhabatosh Das4Molecular Genetics Laboratory, Center for Human Microbial Ecology, Translational Health Science and Technology Institute, Faridabad, 121001 India.
Daisuke Motooka5Department of Infection Metagenomics, Genome Information Research Center, Research Institute for Microbial Diseases, Osaka University, Osaka, 565-0871 Japan.
Shuuichi Nakaya6Global Applications Development Center, Shimadzu Corp, Kyoto, 604-8511 Japan.
Temsunaro Rongsen-Chandola7Centre for Health Research and Development, Society for Applied Studies, New Delhi, 110016 India.
Nidhi Goyal7Centre for Health Research and Development, Society for Applied Studies, New Delhi, 110016 India.
Hisako Kayama1Department of Microbiology and Immunology, Graduate School of Medicine, Osaka University, Suita, Osaka, 565-0871 Japan.
Dylan Dodd8Department of Pathology, Stanford University School of Medicine, Stanford, CA 94305 USA.
Ryu Okumura1Department of Microbiology and Immunology, Graduate School of Medicine, Osaka University, Suita, Osaka, 565-0871 Japan.
Yuichi Maeda1Department of Microbiology and Immunology, Graduate School of Medicine, Osaka University, Suita, Osaka, 565-0871 Japan.
Kosuke Fujimoto1Department of Microbiology and Immunology, Graduate School of Medicine, Osaka University, Suita, Osaka, 565-0871 Japan.
Takuro Nii1Department of Microbiology and Immunology, Graduate School of Medicine, Osaka University, Suita, Osaka, 565-0871 Japan.
Takao Ogawa1Department of Microbiology and Immunology, Graduate School of Medicine, Osaka University, Suita, Osaka, 565-0871 Japan.
Tetsuya Iida5Department of Infection Metagenomics, Genome Information Research Center, Research Institute for Microbial Diseases, Osaka University, Osaka, 565-0871 Japan.
Nita Bhandari7Centre for Health Research and Development, Society for Applied Studies, New Delhi, 110016 India.ORCID 0000-0003-0349-087X
Toshiyuki Kida11Department of Applied Chemistry, Graduate School of Engineering, Osaka University, Osaka, 565-0871 Japan.
Shota Nakamura5Department of Infection Metagenomics, Genome Information Research Center, Research Institute for Microbial Diseases, Osaka University, Osaka, 565-0871 Japan.
G Balakrish Nair4Molecular Genetics Laboratory, Center for Human Microbial Ecology, Translational Health Science and Technology Institute, Faridabad, 121001 India.
Kiyoshi Takeda1Department of Microbiology and Immunology, Graduate School of Medicine, Osaka University, Suita, Osaka, 565-0871 Japan.
Japan Agency for Medical Research and Development · JPOsaka City University · JPThe University of Osaka · JPSociety for Applied Studies · INTranslational Health Science and Technology Institute · INOsaka University of Economics · JPShimadzu (Japan) · JPStanford University · US

Funding

Modulation of gut bacteria-derived host metabolitesK08DK110335 · NIDDK · STANFORD UNIVERSITY · PI DODD, DYLAN · 2018 to 2021
$573k
NIDDK NIH HHS K08 DK110335
6 · The paper itself

Abstract

The bacterial species living in the gut mediate many aspects of biological processes such as nutrition and activation of adaptive immunity. In addition, commensal fungi residing in the intestine also influence host health. Although the interaction of bacterium and fungus has been shown, its precise mechanism during colonization of the human intestine remains largely unknown. Here, we show interaction between bacterial and fungal species for utilization of dietary components driving their efficient growth in the intestine. Next generation sequencing of fecal samples from Japanese and Indian adults revealed differential patterns of bacterial and fungal composition. In particular, Indians, who consume more plant polysaccharides than Japanese, harbored increased numbers of

Indexed as

Gastrointestinal MicrobiomeMicrobial InteractionsAnimalsBacteriaDietFecesFungiHumansIndiaJapanMiceModels, AnimalPolysaccharidesPolysaccharidesMicrobiomeSymbiosis

Identifiers

PMID31885873
PMCPMC6925221
OpenAlexW2995844672

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.