ArticleBMC biology2019
Charting the diversity of uncultured viruses of Archaea and Bacteria.
Article in BMC biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.
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Who cites it
24 citing papers in PubMed.
- Unexplored viral diversity in Siberian cranes and wild geese: metagenomic insights from a global wintering haven.mSystems · 2025Article
- Whole-Genome Shotgun Sequencing from Chicken Clinical Tracheal Samples for Bacterial and Novel Bacteriophage Identification.Veterinary sciences · 2025Article
- Genomic and induction evidence for bacteriophage contributions to sargassum-bacteria symbioses.Microbiome · 2024Article
- Article
- Host-specific viral predation network on coral reefs.The ISME journal · 2024Article
- Globally distributed bacteriophage genomes reveal mechanisms of tripartite phage-bacteria-coral interactions.The ISME journal · 2024Article
- Computational host range prediction-The good, the bad, and the ugly.Virus evolution · 2024Article
- Genomic diversity and biogeographic distributions of a novel lineage of bacteriophages that infect marine OM43 bacteria.Microbiology spectrum · 2023Article
- Viruses of sulfur oxidizing phototrophs encode genes for pigment, carbon, and sulfur metabolisms.Communications earth & environment · 2023Article
- Metagenomic analysis reveals unexplored diversity of archaeal virome in the human gut.Nature communications · 2022Article
- Novel Virus Identification through Metagenomics: A Systematic Review.Life (Basel, Switzerland) · 2022Review
- Newly identified HMO-2011-type phages reveal genomic diversity and biogeographic distributions of this marine viral group.The ISME journal · 2022Article
- Microbial Diversity in the Indian Ocean Sediments: An Insight into the Distribution and Associated Factors.Current microbiology · 2022Review
- Towards an integrative view of virus phenotypes.Nature reviews. Microbiology · 2022Review
- Computational Prediction of Bacteriophage Host Ranges.Microorganisms · 2022Review
- Spatial and Temporal Dynamics of Prokaryotic and Viral Community Assemblages in a Lotic System (Manatee Springs, Florida).Applied and environmental microbiology · 2021Article
- Gut dsDNA virome shows diversity and richness alterations associated with childhood obesity and metabolic syndrome.iScience · 2021Article
- RaFAH: Host prediction for viruses of Bacteria and Archaea based on protein content.Patterns (New York, N.Y.) · 2021Article
- Prophage Genomics and Ecology in the FamilyMicroorganisms · 2021Article
- CheckV assesses the quality and completeness of metagenome-assembled viral genomes.Nature biotechnology · 2021Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
3 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundViruses of Archaea and Bacteria are among the most abundant and diverse biological entities on Earth. Unraveling their biodiversity has been challenging due to methodological limitations. Recent advances in culture-independent techniques, such as metagenomics, shed light on the unknown viral diversity, revealing thousands of new viral nucleotide sequences at an unprecedented scale. However, these novel sequences have not been properly classified and the evolutionary associations between them were not resolved.
resultsHere, we performed phylogenomic analysis of nearly 200,000 viral nucleotide sequences to establish GL-UVAB: Genomic Lineages of Uncultured Viruses of Archaea and Bacteria. The pan-genome content of the identified lineages shed light on some of their infection strategies, potential to modulate host physiology, and mechanisms to escape host resistance systems. Furthermore, using GL-UVAB as a reference database for annotating metagenomes revealed elusive habitat distribution patterns of viral lineages and environmental drivers of community composition.
conclusionsThese findings provide insights about the genomic diversity and ecology of viruses of prokaryotes. The source code used in these analyses is freely available at https://sourceforge.net/projects/gluvab/.
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