Evidence map›Paper›PMID 31884714›Full record

ArticleChemistry (Weinheim an der Bergstrasse, Germany)2020

Small Sequence-Sensitive Compounds for Specific Recognition of the G⋅C Base Pair in DNA Minor Groove.

Abdelbasset A Farahat, Pu Guo, Hadir Shoeib, Ananya Paul, David W Boykin, W David Wilson

Open access · greenAbstract read
In one paragraph

Article in Chemistry (Weinheim an der Bergstrasse, Germany), 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.3field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 5 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Abdelbasset A FarahatDepartment of Chemistry and Center for Diagnostics and Therapeutics, Georgia State University, 50 Decatur St SE, Atlanta, GA, 30303, USA.ORCID http://orcid.org/0000-0003-0664-5670
Pu GuoDepartment of Chemistry and Center for Diagnostics and Therapeutics, Georgia State University, 50 Decatur St SE, Atlanta, GA, 30303, USA.
Hadir ShoeibDepartment of Chemistry and Center for Diagnostics and Therapeutics, Georgia State University, 50 Decatur St SE, Atlanta, GA, 30303, USA.
Ananya PaulDepartment of Chemistry and Center for Diagnostics and Therapeutics, Georgia State University, 50 Decatur St SE, Atlanta, GA, 30303, USA.
David W BoykinDepartment of Chemistry and Center for Diagnostics and Therapeutics, Georgia State University, 50 Decatur St SE, Atlanta, GA, 30303, USA.
W David WilsonDepartment of Chemistry and Center for Diagnostics and Therapeutics, Georgia State University, 50 Decatur St SE, Atlanta, GA, 30303, USA.
Georgia State University · USMansoura University · EG

Funding

Molecular Design for Specific Recognition of Functional DNA SequencesR01GM111749 · NIGMS · GEORGIA STATE UNIVERSITY · PI WILSON, W DAVID · 2014 to 2021
$2.5M
Leukemia & Lymphoma Society 6504-17NIGMS NIH HHS R01 GM111749NIH HHS GM111749
6 · The paper itself

Abstract

A series of small diamidines with thiophene and modified N-alkylbenzimidazole σ-hole module represent specific binding to single G⋅C base pair (bp) DNA sequence. The variation of N-alkyl or aromatic rings were sensitive to microstructures of the DNA minor groove. Thirteen new compounds were synthesized to test their binding affinity and selectivity. The dicyanobenzimidazoles needed to synthesize the target diamidines were made via condensation/cyclization reactions of different aldehydes with different 3-amino-4-(alkyl- or phenyl-amino) benzonitriles. The final diamidines were synthesized using lithium bis-trimethylsilylamide (LiN[Si(CH

Indexed as

Base PairingBiosensing TechniquesCircular DichroismDNAPentamidineSpectrometry, FluorescenceThiophenesDNAPentamidineThiophenesbase pairsbiosensorsdiamidinesDNAminor groove binders

Identifiers

PMID31884714
PMCPMC7265973
OpenAlexW2998568550

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.