Evidence map›Paper›PMID 31883919›Full record

ArticleStem cell reports2020

Analysis of Differentiation Protocols Defines a Common Pancreatic Progenitor Molecular Signature and Guides Refinement of Endocrine Differentiation.

Agata Wesolowska-Andersen, Rikke Rejnholdt Jensen, Marta Pérez Alcántara, Nicola L Beer, Claire Duff, Vibe Nylander, Matthew Gosden, Lorna Witty, Rory Bowden, Mark I McCarthy and 3 more

Open access · goldAbstract read
In one paragraph

Article in Stem cell reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
5.7field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 56 citations in OpenAlex.

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  11. Advanced therapy to cure diabetes: mission impossible is now possible?Frontiers in cell and developmental biology · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 2 countries.

Agata Wesolowska-AndersenWellcome Centre Human Genetics, University of Oxford, OX3 7BN Oxford, UK.
Rikke Rejnholdt JensenStem Cell R&D, Novo Nordisk A/S, 2760 Måløv, Denmark.
Marta Pérez AlcántaraWellcome Centre Human Genetics, University of Oxford, OX3 7BN Oxford, UK.
Nicola L BeerOxford Centre for Diabetes, Endocrinology and Metabolism, University of Oxford, OX3 7LE Oxford, UK.
Claire DuffOxford Centre for Diabetes, Endocrinology and Metabolism, University of Oxford, OX3 7LE Oxford, UK.
Vibe NylanderOxford Centre for Diabetes, Endocrinology and Metabolism, University of Oxford, OX3 7LE Oxford, UK.
Matthew GosdenThe MRC Weatherall Institute of Molecular Medicine, University of Oxford, OX3 9DS Oxford, UK.
Lorna WittyWellcome Centre Human Genetics, University of Oxford, OX3 7BN Oxford, UK.
Rory BowdenWellcome Centre Human Genetics, University of Oxford, OX3 7BN Oxford, UK.
Mark I McCarthyWellcome Centre Human Genetics, University of Oxford, OX3 7BN Oxford, UK; Oxford Centre for Diabetes, Endocrinology and Metabolism, University of Oxford, OX3 7LE Oxford, UK; NIHR Oxford Biomedical Research Centre, Churchill Hospital, OX3 7LE Oxford, UK.
Mattias HanssonStem Cell R&D, Novo Nordisk A/S, 2760 Måløv, Denmark.
Anna L GloynWellcome Centre Human Genetics, University of Oxford, OX3 7BN Oxford, UK; Oxford Centre for Diabetes, Endocrinology and Metabolism, University of Oxford, OX3 7LE Oxford, UK; NIHR Oxford Biomedical Research Centre, Churchill Hospital, OX3 7LE Oxford, UK.
Christian HonoreStem Cell R&D, Novo Nordisk A/S, 2760 Måløv, Denmark. Electronic address: clfh@novonordisk.com.
University of Oxford · GBNovo Nordisk (Denmark) · DKCentre for Human Genetics · GBOxford Centre for Diabetes, Endocrinology and Metabolism · GBChurchill Hospital · GB

Funding

Identifying variants causal for Type 2 Diabetes in Major human populationsU01DK085545 · NIDDK · UNIVERSITY OF OXFORD · PI CHAN, JULIANA CN, EBRAHIM, SHAH BRIAN · 2009 to 2013
$2.8M
Integrating genome-scale data to reveal causal mechanisms in type 2 diabetesU01DK105535 · NIDDK · UNIVERSITY OF OXFORD · PI GLOYN, ANNA LOUISE · 2015 to 2019
$1.7M
Medical Research Council MR/L020149/1NIDDK NIH HHS U01 DK085545NIDDK NIH HHS U01 DK105535Wellcome Trust 090532/Z/09/ZWellcome Trust 095101Wellcome Trust 098381Wellcome Trust 106130Wellcome Trust 200837Wellcome Trust 200837/Z/16/ZWellcome Trust 203141Wellcome Trust 203141/Z/16/ZWellcome Trust 212259
6 · The paper itself

Abstract

Several distinct differentiation protocols for deriving pancreatic progenitors (PPs) from human pluripotent stem cells have been described, but it remains to be shown how similar the PPs are across protocols and how well they resemble their in vivo counterparts. Here, we evaluated three differentiation protocols, performed RNA and assay for transposase-accessible chromatin using sequencing on isolated PPs derived with these, and compared them with fetal human pancreas populations. This enabled us to define a shared transcriptional and epigenomic signature of the PPs, including several genes not previously implicated in pancreas development. Furthermore, we identified a significant and previously unappreciated cross-protocol variation of the PPs through multi-omics analysis and demonstrate how such information can be applied to refine differentiation protocols for derivation of insulin-producing beta-like cells. Together, our study highlights the importance of a detailed characterization of defined cell populations derived from distinct differentiation protocols and provides a valuable resource for exploring human pancreatic development.

Indexed as

Cell DifferentiationBiomarkersCell Culture TechniquesCells, CulturedChromatin Assembly and DisassemblyComputational BiologyEpigenesis, GeneticGene Expression ProfilingHumansImmunophenotypingIslets of LangerhansPancreasPluripotent Stem CellsBiomarkerscell identitydirected differentiationdisease modelingendocrine differentiationmulti-omics analysisopen chromatinpancreatic endodermpancreatic progenitorspluripotent stem cellstranscriptomics

Identifiers

PMID31883919
PMCPMC6962645
OpenAlexW2997946728

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.