ArticleBioinformatics (Oxford, England)2020
ShinyGO: a graphical gene-set enrichment tool for animals and plants.
Article in Bioinformatics (Oxford, England), 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3,152 papers, 1 of them a synthesis that pooled it.
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Who cites it
3,152 citing papers in PubMed, 1 synthesis or guideline pooled it.
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3,092 more citing papers are in PubMed but not listed here.
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Authors and funding
3 authors.
Funding
Abstract
motivationGene lists are routinely produced from various omic studies. Enrichment analysis can link these gene lists with underlying molecular pathways and functional categories such as gene ontology (GO) and other databases.
resultsTo complement existing tools, we developed ShinyGO based on a large annotation database derived from Ensembl and STRING-db for 59 plant, 256 animal, 115 archeal and 1678 bacterial species. ShinyGO's novel features include graphical visualization of enrichment results and gene characteristics, and application program interface access to KEGG and STRING for the retrieval of pathway diagrams and protein-protein interaction networks. ShinyGO is an intuitive, graphical web application that can help researchers gain actionable insights from gene-sets. AVAILABILITY AND IMPLEMENTATION: http://ge-lab.org/go/. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.
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