Evidence map›Paper›PMID 31882850›Full record

ArticleScientific reports2019

Identification of a key gene module associated with glucocorticoid- induced derangement in bone mineral density in patients with asthma.

Suh-Young Lee, Ha-Kyeong Won, Byung-Keun Kim, Sae-Hoon Kim, Yoon-Seok Chang, Sang-Heon Cho, H William Kelly, Kelan G Tantisira, Heung-Woo Park

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.4field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 4 countries.

Suh-Young LeeDepartment of Internal Medicine, Seoul National University College of Medicine, Seoul, Republic of Korea.
Ha-Kyeong WonDepartment of Internal Medicine, Seoul National University College of Medicine, Seoul, Republic of Korea.
Byung-Keun KimDepartment of Internal Medicine, Korea University Medical Center Anam Hospital, Seoul, Republic of Korea.ORCID http://orcid.org/0000-0001-5147-6306
Sae-Hoon KimDepartment of Internal Medicine, Seoul National University Bundang Hospital, Seongnam, Gyeonggi-do, Republic of Korea.
Yoon-Seok ChangDepartment of Internal Medicine, Seoul National University Bundang Hospital, Seongnam, Gyeonggi-do, Republic of Korea.
Sang-Heon ChoDepartment of Internal Medicine, Seoul National University College of Medicine, Seoul, Republic of Korea.
H William KellyDepartment of Pediatrics, University of New Mexico Health Sciences Center, Albuquerque, NM, USA.
Kelan G TantisiraThe Channing Division of Network Medicine, Department of Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA.
Heung-Woo ParkDepartment of Internal Medicine, Seoul National University College of Medicine, Seoul, Republic of Korea. guinea71@snu.ac.kr.
Seoul National University · KRBrigham and Women's Hospital · USSeoul National University Bundang Hospital · KRKorea University Medical Center · KRUniversity of New Mexico · US

Funding

THE PHARMACOGENETICS OF ASTHMA TREATMENTU01HL065899 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI TANTISIRA, KELAN G, WEISS, SCOTT T · 2000 to 2014
$38.5M
MICRORNAS IN CIRCULATION: ONTOLOGIES OF ASTHMA SEVERITY AND TREATMENT (MICROCOAST)R01HL127332 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI TANTISIRA, KELAN G · 2015 to 2018
$3.4M
GENOMICS AND PHARMACOGENOMICS OF SYMPTOMS IN ASTHMAR01NR013391 · NINR · BRIGHAM AND WOMEN'S HOSPITAL · PI TANTISIRA, KELAN G · 2011 to 2013
$1.3M
NHLBI NIH HHS R01 HL127332NHLBI NIH HHS U01 HL065899NINR NIH HHS R01 NR013391
6 · The paper itself

Abstract

Derangement in bone mineral density (BMD) caused by glucocorticoid is well-known. The present study aimed to find key biological pathways associated with low BMD after glucocorticoid treatment in asthmatics using gene expression profiles of peripheral blood cells. We utilized immortalized B cells (IBCs) from 32 childhood asthmatics after multiple oral glucocorticoid bursts and peripheral blood mononuclear cells (PBMCs) from 17 adult asthmatics after a long-term use of oral glucocorticoid. We searched co-expressed gene modules significantly related with the BMD Z score in childhood asthmatics and tested if these gene modules were preserved and significantly associated with the BMD Z score in adult asthmatics as well. We identified a gene module composed of 199 genes significantly associated with low BMD in both childhood and adult asthmatics. The structure of this module was preserved across gene expression profiles. We found that the cellular metabolic pathway was significantly enriched in this module. Among 18 hub genes in this module, we postulated that 2 genes, CREBBP and EP300, contributed to low BMD following a literature review. A novel biologic pathway identified in this study highlighted a gene module and several genes as playing possible roles in the pathogenesis of glucocorticoid- induced derangement in BMD.

Indexed as

AdolescentAgedAnti-Asthmatic AgentsAsthmaBiomarkersBone DensityChildComputational BiologyFemaleGene Expression ProfilingGene Regulatory NetworksGenetic Predisposition to DiseaseGenome-Wide Association StudyGlucocorticoidsHumansMaleAnti-Asthmatic AgentsBiomarkersGlucocorticoids

Identifiers

PMID31882850
PMCPMC6934743
OpenAlexW2997365838

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.