ArticleScientific reports2019
Genome-Wide SNP discovery and genomic characterization in avocado (Persea americana Mill.).
Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 18 papers.
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18 citing papers in PubMed.
- Advances In the Valorization of Avocado By-Products: Bioactive Compounds, Techno-Functional Properties, and Structure-Function Relationships.Plant foods for human nutrition (Dordrecht, Netherlands) · 2026Review
- Genomic Diversity of Avocado in the Morogoro Region and Southern Highlands of Tanzania.International journal of molecular sciences · 2026Article
- Whole Genome Resequencing of 205 Avocado Trees Unveils the Genomic Patterns of Racial Divergence in the Americas.International journal of molecular sciences · 2025Article
- Genotyping and diversity analysis of local avocado landraces in La Palma, Canary Islands.Frontiers in plant science · 2025Article
- Genome-wide association study identifies key quantitative trait loci (QTL) for fruit morphometric traits in avocado (Persea spp.).BMC genomics · 2024Article
- A telomere-to-telomere gap-free reference genome assembly of avocado provides useful resources for identifying genes related to fatty acid biosynthesis and disease resistance.Horticulture research · 2024Article
- Characterization of Eighty-Eight Single-Nucleotide Polymorphism Markers in the Manila ClamAnimals : an open access journal from MDPI · 2024Article
- Comprehensive genetic diversity and genome-wide association studies revealed the genetic basis of avocado fruit quality traits.Frontiers in plant science · 2024Article
- Identification and high-throughput genotyping of single nucleotide polymorphism markers in a non-model conifer (Abies nordmanniana (Steven) Spach).Scientific reports · 2023Article
- Selective signatures and high genome-wide diversity in traditional Brazilian manioc (Manihot esculenta Crantz) varieties.Scientific reports · 2022Article
- Inheritance of Yield Components and Morphological Traits in Avocado cv. Hass From "Criollo" "Elite Trees"Frontiers in plant science · 2022Article
- Partially Resistant Avocado Rootstock DusaFrontiers in plant science · 2022Article
- Comparative Analysis of Genotyping by Sequencing and Whole-Genome Sequencing Methods in Diversity Studies ofPlants (Basel, Switzerland) · 2021Article
- Elucidation of the Origin of the Monumental Olive Tree of Vouves in Crete, Greece.Plants (Basel, Switzerland) · 2021Article
- Single-nucleotide polymorphisms that uniquely identify cultivars of avocado (Applications in plant sciences · 2021Article
- Article
- Improvements in the sequencing and assembly of plant genomes.GigaByte (Hong Kong, China) · 2021Article
- Inheritance of Rootstock Effects in Avocado (Frontiers in plant science · 2020Article
Corrections and comments
- Erratum issued
Authors and funding
5 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Modern crop breeding is based on the use of genetically and phenotypically diverse plant material and, consequently, a proper understanding of population structure and genetic diversity is essential for the effective development of breeding programs. An example is avocado, a woody perennial fruit crop native to Mesoamerica with an increasing popularity worldwide. Despite its commercial success, there are important gaps in the molecular tools available to support on-going avocado breeding programs. In order to fill this gap, in this study, an avocado 'Hass' draft assembly was developed and used as reference to study 71 avocado accessions which represent the three traditionally recognized avocado horticultural races or subspecies (Mexican, Guatemalan and West Indian). An average of 5.72 M reads per individual and a total of 7,108 single nucleotide polymorphism (SNP) markers were produced for the 71 accessions analyzed. These molecular markers were used in a study of genetic diversity and population structure. The results broadly separate the accessions studied according to their botanical race in four main groups: Mexican, Guatemalan, West Indian and an additional group of Guatemalan × Mexican hybrids. The high number of SNP markers developed in this study will be a useful genomic resource for the avocado community.
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