Evidence map›Paper›PMID 31882688›Full record

ArticleScientific reports2019

The host generalist phytopathogenic fungus Sclerotinia sclerotiorum differentially expresses multiple metabolic enzymes on two different plant hosts.

Jefferson Allan, Roshan Regmi, Matthew Denton-Giles, Lars G Kamphuis, Mark C Derbyshire

Abstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed.

  1. Article
  2. Copper Radical Oxidases Contribute to Virulence inPathogens (Basel, Switzerland) · 2026
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Transcriptome analysis ofFrontiers in plant science · 2024
    Article
  8. Article
  9. Population and genome-wide association studies ofFrontiers in microbiology · 2023
    Article
  10. Frontiers in plant science · 2023
    Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Draft genome sequence ofCurrent research in microbial sciences · 2022
    Article
  16. Article
  17. SsAGM1-Mediated Uridine Diphosphate-Frontiers in microbiology · 2022
    Article
  18. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Jefferson AllanCentre for Crop and Disease Management (CCDM), Curtin University, Kent Street, Perth, 6102, WA, Australia.
Roshan RegmiCentre for Crop and Disease Management (CCDM), Curtin University, Kent Street, Perth, 6102, WA, Australia.
Matthew Denton-GilesCentre for Crop and Disease Management (CCDM), Curtin University, Kent Street, Perth, 6102, WA, Australia.
Lars G KamphuisCentre for Crop and Disease Management (CCDM), Curtin University, Kent Street, Perth, 6102, WA, Australia.
Mark C DerbyshireCentre for Crop and Disease Management (CCDM), Curtin University, Kent Street, Perth, 6102, WA, Australia. mark.derbyshire@curtin.edu.au.ORCID http://orcid.org/0000-0001-5302-9868

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Sclerotinia sclerotiorum is a necrotrophic fungal pathogen that infects upwards of 400 plant species, including several economically important crops. The molecular processes that underpin broad host range necrotrophy are not fully understood. This study used RNA sequencing to assess whether S. sclerotiorum genes are differentially expressed in response to infection of the two different host crops canola (Brassica napus) and lupin (Lupinus angustifolius). A total of 10,864 of the 11,130 genes in the S. sclerotiorum genome were expressed. Of these, 628 were upregulated in planta relative to in vitro on at least one host, suggesting involvement in the broader infection process. Among these genes were predicted carbohydrate-active enzymes (CAZYmes) and secondary metabolites. A considerably smaller group of 53 genes were differentially expressed between the two plant hosts. Of these host-specific genes, only six were either CAZymes, secondary metabolites or putative effectors. The remaining genes represented a diverse range of functional categories, including several associated with the metabolism and efflux of xenobiotic compounds, such as cytochrome P450s, metal-beta-lactamases, tannases and major facilitator superfamily transporters. These results suggest that S. sclerotiorum may regulate the expression of detoxification-related genes in response to phytotoxins produced by the different host species. To date, this is the first comparative whole transcriptome analysis of S. sclerotiorum during infection of different hosts.

Indexed as

AscomycotaBrassica napusDisease ResistanceGene Expression Regulation, FungalHost-Pathogen InteractionsLupinusPlant DiseasesPlant ProteinsSequence Analysis, RNATranscriptomePlant Proteins

Identifiers

PMID31882688
PMCPMC6934579

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.