Evidence map›Paper›PMID 31882631›Full record

ArticleScientific reports2019

Extensive recombination challenges the utility of Sugarcane mosaic virus phylogeny and strain typing.

Luke Braidwood, Sebastian Y Müller, David Baulcombe

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
3.8field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 20 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 2 countries.

Luke BraidwoodUniversity of Cambridge, Department of Plant Sciences, Cambridge, CB2 3EA, United Kingdom. braidwoodluke@gmail.com.
Sebastian Y MüllerUniversity of Cambridge, Department of Plant Sciences, Cambridge, CB2 3EA, United Kingdom.ORCID http://orcid.org/0000-0002-0148-7020
David BaulcombeUniversity of Cambridge, Department of Plant Sciences, Cambridge, CB2 3EA, United Kingdom.ORCID http://orcid.org/0000-0003-0780-6878
University of Cambridge · GB

Funding

PROPERTIES OF LYMPHOID TUMOR CELLS IN VIVO-IN VITROR01CA014462 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI TSIAGBE, VINCENT K · 1985 to 2002
$832k
RCUK | Biotechnology and Biological Sciences Research Council (BBSRC) DTP PDAG/223 task 23RCUK | Biotechnology and Biological Sciences Research Council (BBSRC) RG81014/Braidwood/11917
6 · The paper itself

Abstract

Sugarcane mosaic virus (SCMV) is distributed worldwide and infects three major crops: sugarcane, maize, and sorghum. The impact of SCMV is increased by its interaction with Maize chlorotic mottle virus which causes the synergistic maize disease maize lethal necrosis. Here, we characterised maize lethal necrosis-infected maize from multiple sites in East Africa, and found that SCMV was present in all thirty samples. This distribution pattern indicates that SCMV is a major partner virus in the East African maize lethal necrosis outbreak. Consistent with previous studies, our SCMV isolates were highly variable with several statistically supported recombination hot- and cold-spots across the SCMV genome. The recombination events generate conflicting phylogenetic signals from different fragments of the SCMV genome, so it is not appropriate to group SCMV genomes by simple similarity.

Indexed as

PhylogenyRecombination, GeneticGenes, ViralHigh-Throughput Nucleotide SequencingPotyvirusSaccharumSpecies Specificity

Identifiers

PMID31882631
PMCPMC6934591
OpenAlexW2996767894

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.