Evidence map›Paper›PMID 31879734›Full record

ArticleProceedings. IEEE International Conference on Healthcare Informatics2019

A Study of Deep Learning Methods for De-identification of Clinical Notes at Cross Institute Settings.

Xi Yang, Tianchen Lyu, Chih-Yin Lee, Jiang Bian, William R Hogan, Yonghui Wu

Open access · greenAbstract read
In one paragraph

Article in Proceedings. IEEE International Conference on Healthcare Informatics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
2.5field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 20 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Xi YangHealth Outcomes and Biomedical Informatics College of Medicine, University of Florida Gainesville, USA.
Tianchen LyuHealth Outcomes and Biomedical Informatics College of Medicine, University of Florida Gainesville, USA.
Chih-Yin LeeHealth Outcomes and Biomedical Informatics College of Medicine, University of Florida Gainesville, USA.
Jiang BianHealth Outcomes and Biomedical Informatics College of Medicine, University of Florida Gainesville, USA.
William R HoganHealth Outcomes and Biomedical Informatics College of Medicine, University of Florida Gainesville, USA.
Yonghui WuHealth Outcomes and Biomedical Informatics College of Medicine, University of Florida Gainesville, USA.
University of Florida Health · US

Funding

Using social networks to map and evaluate team science across CTSA hubsUL1TR001427 · NCATS · UNIVERSITY OF FLORIDA · PI MITCHELL, DUANE A. · 2015 to 2024
$37.2M
University of Florida Older Americans Independence Center (OAIC)P30AG028740 · NIA · UNIVERSITY OF FLORIDA · PI CHRISTIAAN LEEUWENBURGH · 2007 to 2026
$22.8M
NCATS NIH HHS UL1 TR001427NIA NIH HHS P30 AG028740
6 · The paper itself

Abstract

In this study, we examined a deep learning method for de-identification of clinical notes at UF Health under a cross-institute setting. We developed deep learning models using 2014 i2b2/UTHealth corpus and evaluated the performance using clinical notes collected from UF Health. We compared four pre-trained word embeddings, including two embeddings from the general domain and two embeddings from the clinical domain. We also explored linguistic features (i.e., word shape and part-of-speech) to further improve the performance of de-identification. The experimental results show that the performance of deep learning models trained using i2b2/UTHealth corpus significantly dropped (strict and relax F1 scores dropped from 0.9547 and 0.9646 to 0.8360 and 0.8870) when applied to another corpus from a different institution (UF Health). Linguistic features, including word shapes and part-of-speech, could further improve the performance of de-identification in cross-institute settings (improved to 0.8527 and 0.9052).

Indexed as

Deep LearningDe-identificationNatural Language Processing

Identifiers

PMID31879734
PMCPMC6932867
OpenAlexW2990085462

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.