Evidence map›Paper›PMID 31879579›Full record

Article3 Biotech2020

Metagenome sequencing of fingermillet-associated microbial consortia provides insights into structural and functional diversity of endophytes.

M K Prasannakumar, H B Mahesh, Radhika U Desai, Bharath Kunduru, Karthik S Narayan, Kalavati Teli, M E Puneeth, R C Rajadurai, Buella Parivallal, Gopal Venkatesh Babu

Open access · bronzeAbstract read
In one paragraph

Article in 3 Biotech, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 19 citations in OpenAlex.

  1. Review
  2. Article
  3. Finger Millet (Microorganisms · 2023
    Article
  4. Article
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

M K Prasannakumar1Plant Pathogenomic Laboratory, Department of Plant Pathology, University of Agricultural Sciences, GKVK, Bengaluru, Karnataka India.
H B MaheshDepartment of Genetics and Plant Breeding, College of Agriculture, Mandya, Karnataka India.ORCID 0000-0001-7830-2234
Radhika U Desai1Plant Pathogenomic Laboratory, Department of Plant Pathology, University of Agricultural Sciences, GKVK, Bengaluru, Karnataka India.
Bharath Kunduru1Plant Pathogenomic Laboratory, Department of Plant Pathology, University of Agricultural Sciences, GKVK, Bengaluru, Karnataka India.
Karthik S Narayan3Department of Centre for Advanced Study in Botany, University of Madras, Chennai, India.
Kalavati Teli1Plant Pathogenomic Laboratory, Department of Plant Pathology, University of Agricultural Sciences, GKVK, Bengaluru, Karnataka India.
M E Puneeth1Plant Pathogenomic Laboratory, Department of Plant Pathology, University of Agricultural Sciences, GKVK, Bengaluru, Karnataka India.
R C RajaduraiAgriGenome Laboratory, Cochin, Kerala India.
Buella Parivallal1Plant Pathogenomic Laboratory, Department of Plant Pathology, University of Agricultural Sciences, GKVK, Bengaluru, Karnataka India.
Gopal Venkatesh Babu3Department of Centre for Advanced Study in Botany, University of Madras, Chennai, India.
University of Agricultural Sciences, Bangalore · INUniversity of Madras · INInstitute of Plant Genetics, Polish Academy of Sciences · PLSciGenom Labs (India) · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Endophytes confer unique ecological advantages to their host plants. In this study, we have characterized the diversity of endophytic consortia associated with the GPU-28 (GPU) and Udurumallige (UM) finger millet varieties, which are resistant and susceptible to the blast disease, respectively. Whole genome metagenome sequencing of GPU and UM helped to identify 1029 species (includes obligate endophytes) of microbiota. Among them, 385 and 357 species were unique to GPU and UM, respectively. Remaining 287 species were common to both the varieties. Actinobacteria and other plant-growth promoting bacteria were abundant in GPU as compared to UM. Functional annotation of genes predicted from genomes of endophytes associated with GPU variety showed that many genes had functional role in stress response, secondary metabolism, aromatic compounds, glutathione, and cysteine synthesis pathways as compared to UM. Based on in vitro and in planta studies,

Indexed as

Blast diseaseEndophytesFingermilletMagnaportheMetagenome sequencing

Identifiers

PMID31879579
PMCPMC6904717
OpenAlexW2996174759

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.