Evidence map›Paper›PMID 31878964›Full record

ArticleBMC research notes2019

Draft genome of Ompok bimaculatus (Pabda fish).

Ruby Dhar, Karthikeyan Pethusamy, Sunil Singh, Indrani Mukherjee, Ashikh Seethy, Bharoti Sengupta, Tryambak Srivastava, Sajib Sarkar, Vikramjit Mandal, Madhumita Karmakar and 3 more

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PubMed Full text at PMC Publisher
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Article in BMC research notes, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.5field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 2 institutions in 1 country.

Ruby DharDepartment of Biochemistry, All India Institute of Medical Sciences, New Delhi, India.
Karthikeyan PethusamyDepartment of Biochemistry, All India Institute of Medical Sciences, New Delhi, India.
Sunil SinghDepartment of Biochemistry, All India Institute of Medical Sciences, New Delhi, India.
Indrani MukherjeeDepartment of Biochemistry, All India Institute of Medical Sciences, New Delhi, India.
Ashikh SeethyDepartment of Biochemistry, All India Institute of Medical Sciences, New Delhi, India.
Bharoti SenguptaDepartment of Biochemistry, All India Institute of Medical Sciences, New Delhi, India.
Tryambak SrivastavaDepartment of Biochemistry, All India Institute of Medical Sciences, New Delhi, India.
Sajib SarkarDepartment of Biochemistry, All India Institute of Medical Sciences, New Delhi, India.
Vikramjit MandalEurofins Genomics India Pvt Ltd, Bangalore, India.
Madhumita KarmakarEurofins Genomics India Pvt Ltd, Bangalore, India.
Sandipan GuptaDepartment of Industrial Fish and Fisheries, Bramhananda Keshab Chandra College, West Bengal State University, Kolkata, India.
Arpita GhoshEurofins Genomics India Pvt Ltd, Bangalore, India.
Subhradip KarmakarDepartment of Biochemistry, All India Institute of Medical Sciences, New Delhi, India. subhradip.k@aiims.edu.ORCID http://orcid.org/0000-0002-4757-8729
All India Institute of Medical Sciences · INWest Bengal State University · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

objectivePabda (Ompok bimaculatus) is a freshwater catfish, largely available in Asian countries, especially in Bangladesh, India, Pakistan and Nepal. This fish is highly valued for its fabulous taste and high nutritional value and is very popular as a rich source of proteins, omega-3 and omega-6 fatty acids, vitamins and mineral for growing children, pregnant females and elders. We performed de-novo sequencing of Ompok bimaculatus using a hybrid approach and present here a draft assembly for this species for the first time. DATA DESCRIPTION: The genome of Ompok bimaculatus (Fig. 1: Table 1, Data file 3) from Ganges river, has been sequenced by hybrid approach using Illumina short reads and PacBio long reads followed by structural annotations. The draft genome assembly was found to be 718 Mb with N50 size of 81 kb. MAKER gene annotation tool predicted 21,371 genes.

Indexed as

GenomeAnimalsCatfishesFresh WaterHigh-Throughput Nucleotide SequencingIndiaMolecular Sequence AnnotationWhole Genome SequencingButter catfishNGSOmpok bimaculatusSiluridaeWhole genome sequence

Identifiers

PMID31878964
PMCPMC6933649
OpenAlexW2997712549

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.