Evidence map›Paper›PMID 31876282›Full record

ArticleMolekuliarnaia biologiia

[Opposite Effects of Histone H1 and HMGN5 Protein on Distant Interactions in Chromatin].

E V Nizovtseva, Y S Polikanov, O I Kulaeva, N Clauvelin, Y V Postnikov, W K Olson, V M Studitsky

Abstract read
In one paragraph

Article in Molekuliarnaia biologiia. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact, top 88% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 2 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Review
  5. Nucleosome positioning and composition modulate in silico chromatin flexibility.Journal of physics. Condensed matter : an Institute of Physics journal · 2015
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

E V NizovtsevaCancer Epigenetics Program, Fox Chase Cancer Center, Philadelphia, PA, 19422 USA.
Y S PolikanovDepartment of Biological Sciences, University of Illinois at Chicago, Chicago, IL 60607 USA.
O I KulaevaCancer Epigenetics Program, Fox Chase Cancer Center, Philadelphia, PA, 19422 USA.
N ClauvelinDepartment of Chemistry and Chemical Biology, BioMaPS Institute for Quantitative Biology, Rutgers, the State University of New Jersey, Piscataway, NJ 08854 USA.
Y V PostnikovProtein Section, Laboratory of Metabolism, Center for Cancer Research, National Cancer Institute, NIH, Bethesda, MD 20892 USA.
W K OlsonDepartment of Chemistry and Chemical Biology, BioMaPS Institute for Quantitative Biology, Rutgers, the State University of New Jersey, Piscataway, NJ 08854 USA.
V M StuditskyCancer Epigenetics Program, Fox Chase Cancer Center, Philadelphia, PA, 19422 USA.
Lomonosov Moscow State University · RUUniversity of Illinois Chicago · US

Funding

THEORETICFAL ASPECTS OF DNA SUPERCOILINGR01GM034809 · NIGMS · RUTGERS THE ST UNIV OF NJ NEW BRUNSWICK · PI OLSON, WILMA K · 1985 to 2019
$4.6M
Mechanism of yFACT Action during Chromatin TranscriptionR01GM119398 · NIGMS · RESEARCH INST OF FOX CHASE CAN CTR · PI STILLMAN, DAVID J, STUDITSKY, VASILY M · 2017 to 2020
$1.3M
Mechanisms of PARP-1 interaction with chromatinR21CA220151 · NCI · RESEARCH INST OF FOX CHASE CAN CTR · PI STUDITSKY, VASILY M · 2017 to 2019
$435k
NCI NIH HHS R21 CA220151NIGMS NIH HHS R01 GM034809NIGMS NIH HHS R01 GM119398
6 · The paper itself

Abstract

Transcriptional enhancers in the cell nuclei typically interact with the target promoters in cis over long stretches of chromatin, but the mechanism of this communication remains unknown. Previously we have developed a defined in vitro system for quantitative analysis of the rate of distant enhancer-promoter communication (EPC) and have shown that the chromatin fibers maintain efficient distant EPC in cis. Here we investigate the roles of linker histone H1 and HMGN5 protein in EPC. A considerable negative effect of histone H1 on EPC depending on its C- and N-tails was shown. Protein HMGN5 that affects chromatin compaction and is associated with active chromatin counteracts EPC inhibition by H1. The data suggest that the efficiency of the interaction between the enhancer and the promoter depends on the structure and dynamics of the chromatin fiber localized between them and can be regulated by proteins associated with chromatin.

Indexed as

ChromatinEnhancer Elements, GeneticHistonesHMGN ProteinsPromoter Regions, GeneticChromatinHistonesHMGN Proteinschromatinenhancer-promotor communicationHMGN5transcription in vitroН1

Identifiers

PMID31876282
PMCPMC6934096
OpenAlexW2995156057

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.