Evidence map›Paper›PMID 31875662›Full record

ArticleBrain and behavior2020

Analyzing the genes and pathways related to major depressive disorder via a systems biology approach.

Ting Fan, Ying Hu, Juncai Xin, Mengwen Zhao, Ju Wang

Open access · goldAbstract read
In one paragraph

Article in Brain and behavior, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed, 2 pooled it
1.5field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 2 syntheses or guidelines pooled it, 52 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Ting FanSchool of Biomedical Engineering, Tianjin Medical University, Tianjin, China.
Ying HuAcademy of Psychology and Behavior, Tianjin Normal University, Tianjin, China.
Juncai XinSchool of Biomedical Engineering, Tianjin Medical University, Tianjin, China.
Mengwen ZhaoSchool of Biomedical Engineering, Tianjin Medical University, Tianjin, China.
Ju WangSchool of Biomedical Engineering, Tianjin Medical University, Tianjin, China.ORCID 0000-0002-6514-0923
Tianjin Medical University · CNTianjin Normal University · CN

Funding

National Key Research and Development Program of China 2016YFC0906300National Natural Science Foundation of China 31271411National Natural Science Foundation of China 91746205
6 · The paper itself

Abstract

introductionMajor depressive disorder (MDD) is a mental disorder caused by the combination of genetic, environmental, and psychological factors. Over the years, a number of genes potentially associated with MDD have been identified. However, in many cases, the role of these genes and their relationship in the etiology and development of MDD remains unclear. Under such situation, a systems biology approach focusing on the function correlation and interaction of the candidate genes in the context of MDD will provide useful information on exploring the molecular mechanisms underlying the disease.

methodsWe collected genes potentially related to MDD by screening the human genetic studies deposited in PubMed (https://www.ncbi.nlm.nih.gov/pubmed). The main biological themes within the genes were explored by function and pathway enrichment analysis. Then, the interaction of genes was analyzed in the context of protein-protein interaction network and a MDD-specific network was built by Steiner minimal tree algorithm.

resultsWe collected 255 candidate genes reported to be associated with MDD from available publications. Functional analysis revealed that biological processes and biochemical pathways related to neuronal development, endocrine, cell growth and/or survivals, and immunology were enriched in these genes. The pathways could be largely grouped into three modules involved in biological procedures related to nervous system, the immune system, and the endocrine system, respectively. From the MDD-specific network, 35 novel genes potentially associated with the disease were identified.

conclusionBy means of network- and pathway-based methods, we explored the molecular mechanism underlying the pathogenesis of MDD at a systems biology level. Results from our work could provide valuable clues for understanding the molecular features of MDD.

Indexed as

Gene Regulatory NetworksGenome-Wide Association StudyHumansMajor Depressive DisorderMetabolic Networks and PathwaysSystems Biologymajor depressive disordernetwork analysispathway cross talk

Identifiers

PMID31875662
PMCPMC7010578
OpenAlexW2996948187

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.