Evidence map›Paper›PMID 31875538›Full record

ArticleCell reports2019

Targeting of the Dosage-Compensated Male X-Chromosome during Early Drosophila Development.

Leila Elizabeth Rieder, William Thomas Jordan, Erica Nicole Larschan

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 36 citations in OpenAlex.

  1. Article
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  3. N-terminus ofeLife · 2024
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  4. Review
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  8. Sequence reliance of abioRxiv : the preprint server for biology · 2023
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  12. Combinatorial clustering of distinct DNA motifs directs synergistic binding ofProceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Dosage compensation inJournal of genetics · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Leila Elizabeth RiederDepartment of Biology, Emory University, Atlanta, GA 30322, USA. Electronic address: leila.rieder@emory.edu.
William Thomas JordanDepartment of Molecular Biology, Cellular Biology, and Biochemistry, Brown University, Providence, RI 02912, USA.
Erica Nicole LarschanDepartment of Molecular Biology, Cellular Biology, and Biochemistry, Brown University, Providence, RI 02912, USA. Electronic address: erica_larschan@brown.edu.
Brown University · USEmory University · US

Funding

Establishment of Active Chromatin DomainsR35GM126994 · NIGMS · BROWN UNIVERSITY · PI LARSCHAN, ERICA NICOLE · 2018 to 2022
$2.0M
Mechanisms of Nuclear Body Formation in the Early EmbryoR00HD092625 · NICHD · EMORY UNIVERSITY · PI RIEDER, LEILA ELIZABETH · 2019 to 2021
$640k
Mechanisms of Nuclear Body Formation in the Early EmbryoK99HD092625 · NICHD · BROWN UNIVERSITY · PI RIEDER, LEILA ELIZABETH · 2018 to 2019
$235k
The role of CLAMP, a novel zinc-finger protein, in Drosophila dosage compensationF32GM109663 · NIGMS · BROWN UNIVERSITY · PI RIEDER, LEILA ELIZABETH · 2014 to 2017
$167k
NICHD NIH HHS K99 HD092625NICHD NIH HHS R00 HD092625NIGMS NIH HHS F32 GM109663NIGMS NIH HHS R35 GM126994
6 · The paper itself

Abstract

Dosage compensation, which corrects for the imbalance in X-linked gene expression between XX females and XY males, represents a model for how genes are targeted for coordinated regulation. However, the mechanism by which dosage compensation complexes identify the X chromosome during early development remains unknown because of the difficulty of sexing embryos before zygotic transcription using X- or Y-linked reporter transgenes. We used meiotic drive to sex Drosophila embryos before zygotic transcription and ChIP-seq to measure the dynamics of dosage compensation factor targeting. The Drosophila male-specific lethal dosage compensation complex (MSLc) requires the ubiquitous zinc-finger protein chromatin-linked adaptor for MSL proteins (CLAMP) to identify the X chromosome. We observe a multi-stage process in which MSLc first identifies CLAMP binding sites throughout the genome, followed by concentration at the strongest X-linked MSLc sites. We provide insight into the dynamics of binding site recognition by a large transcription complex during early development.

Indexed as

Dosage Compensation, GeneticAnimalsChromatinDrosophila melanogasterDrosophila ProteinsEmbryonic DevelopmentEmbryo, NonmammalianFemaleGene Expression Regulation, DevelopmentalMaleMeiosisReproducibility of ResultsX ChromosomeChromatinDrosophila Proteinschromatin domainCLAMPdosage compensationDrosophilameiotic driveMSL complexSegregation distortertranscription factorzygotic genome activation

Identifiers

PMID31875538
PMCPMC6952266
OpenAlexW2997687826

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.