Evidence map›Paper›PMID 31875226›Full record

ArticleNucleic acids research2020

Staufen1 reads out structure and sequence features in ARF1 dsRNA for target recognition.

Deepak Kumar Yadav, Dagmar Zigáčková, Maria Zlobina, Tomáš Klumpler, Christelle Beaumont, Monika Kubíčková, Štěpánka Vaňáčová, Peter J Lukavsky

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
0.8field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 40 citations in OpenAlex.

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  18. Endogenous Double-Stranded RNA.Non-coding RNA · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Deepak Kumar YadavCentral European Institute of Technology, Masaryk University, Kamenice 753/5, 62500, Brno, Czech Republic.
Dagmar ZigáčkováCentral European Institute of Technology, Masaryk University, Kamenice 753/5, 62500, Brno, Czech Republic.
Maria ZlobinaCentral European Institute of Technology, Masaryk University, Kamenice 753/5, 62500, Brno, Czech Republic.
Tomáš KlumplerCentral European Institute of Technology, Masaryk University, Kamenice 753/5, 62500, Brno, Czech Republic.
Christelle BeaumontCentral European Institute of Technology, Masaryk University, Kamenice 753/5, 62500, Brno, Czech Republic.
Monika KubíčkováCentral European Institute of Technology, Masaryk University, Kamenice 753/5, 62500, Brno, Czech Republic.
Štěpánka VaňáčováCentral European Institute of Technology, Masaryk University, Kamenice 753/5, 62500, Brno, Czech Republic.
Peter J LukavskyCentral European Institute of Technology, Masaryk University, Kamenice 753/5, 62500, Brno, Czech Republic.
Central European Institute of Technology · CZCentral European Institute of Technology – Masaryk University · CZ

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Staufen1 (STAU1) is a dsRNA binding protein mediating mRNA transport and localization, translational control and STAU1-mediated mRNA decay (SMD). The STAU1 binding site (SBS) within human ADP-ribosylation factor1 (ARF1) 3'UTR binds STAU1 and this downregulates ARF1 cytoplasmic mRNA levels by SMD. However, how STAU1 recognizes specific mRNA targets is still under debate. Our structure of the ARF1 SBS-STAU1 complex uncovers target recognition by STAU1. STAU1 dsRNA binding domain (dsRBD) 4 interacts with two pyrimidines and one purine from the minor groove side via helix α1, the β1-β2 loop anchors the dsRBD at the end of the dsRNA and lysines in helix α2 bind to the phosphodiester backbone from the major groove side. STAU1 dsRBD3 displays the same binding mode with specific recognition of one guanine base. Mutants disrupting minor groove recognition of ARF1 SBS affect in vitro binding and reduce SMD in vivo. Our data thus reveal how STAU1 recognizes minor groove features in dsRNA relevant for target selection.

Indexed as

ADP-Ribosylation Factor 1Binding SitesCytoplasmCytoskeletal ProteinsDouble-Stranded RNA Binding MotifHumansProtein ConformationRNA-Binding ProteinsRNA, Double-StrandedRNA StabilityADP-Ribosylation Factor 1Cytoskeletal ProteinsRNA-Binding ProteinsRNA, Double-StrandedSTAU1 protein, human

Identifiers

PMID31875226
PMCPMC7038937
OpenAlexW2997404752

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.