ArticleBMC bioinformatics2019
Comparative transcriptomic analysis of the flower induction and development of the Lei bamboo (Phyllostachys violascens).
Article in BMC bioinformatics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.
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Who cites it
11 citing papers in PubMed, 25 citations in OpenAlex.
- Comprehensive characterization of theFrontiers in plant science · 2026Article
- Bamboo for the Future: From Traditional Use to Industry 5.0 Applications.Plants (Basel, Switzerland) · 2025Review
- Research on Key Genes for Flowering ofGenes · 2025Article
- Chromosome-level genome assembly and annotation of Phyllostachys violascens 'Prevernalis'.Scientific data · 2025Article
- Diversity of organ-specific plant transcriptomes.Acta biochimica Polonica · 2025Review
- Overexpression ofActa biochimica et biophysica Sinica · 2023Article
- Influence of flowering on the anatomical structure, chemical components and carbohydrate metabolism ofFrontiers in plant science · 2023Article
- Genome-wide identification and expression characterization of the DoG gene family of moso bamboo (Phyllostachys edulis).BMC genomics · 2022Article
- The SOC1-like gene BoMADS50 is associated with the flowering of Bambusa oldhamii.Horticulture research · 2021Article
- Refinement of bamboo genome annotations through integrative analyses of transcriptomic and epigenomic data.Computational and structural biotechnology journal · 2021Article
- Complementary Transcriptome and Proteome Analyses Provide Insight into the Floral Transition in Bamboo (International journal of molecular sciences · 2020Article
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Authors and funding
9 authors at 4 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundBamboo is a very important forest resource. However, the prolonged vegetative stages and uncertainty of flowering brings difficulties in bamboo flowers sampling. Until now, the flowering mechanism of bamboo is still unclear.
resultsIn this study, three successive stages of flowering buds and the corresponding vegetative buds (non-flowering stage) from Lei bamboo (Phyllostachys violascens) were collected for transcriptome analysis using Illumina RNA-Seq method. We generated about 442 million clean reads from the above samples, and 132,678 unigenes were acquired with N50 of 1080 bp. A total of 7266 differentially expressed genes (DEGs) were determined. According to expression profile and gene function analysis, some environmental stress responsive and plant hormone-related DEGs were highly expressed in the inflorescence meristem formation stage (TF_1) while some floral organ development related genes were up-regulated significantly in floral organs determination stage (TF_2) and floral organs maturation (TF_3) stage, implying the essential roles of these DEGs in flower induction and maturation of Lei bamboo. Additionally, a total of 25 MADS-box unigenes were identified. Based on the expression profile, B, C/D and E clade genes were more related to floral organs development compared with A clade genes in Lei bamboo.
conclusionsThis transcriptome data presents fundamental information about the genes and pathways involved in flower induction and development of Lei bamboo. Moreover, a critical sampling method is provided which could be benefit for bamboo flowering mechanism study.
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