Evidence map›Paper›PMID 31873741›Full record

ArticleThe Journal of antimicrobial chemotherapy2020

Constitutive expression of the cryptic vanGCd operon promotes vancomycin resistance in Clostridioides difficile clinical isolates.

Wan-Jou Shen, Aditi Deshpande, Kirk E Hevener, Bradley T Endres, Kevin W Garey, Kelli L Palmer, Julian G Hurdle

Open access · greenAbstract read
In one paragraph

Article in The Journal of antimicrobial chemotherapy, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed, 1 pooled it
3.0field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 1 synthesis or guideline pooled it, 65 citations in OpenAlex.

  1. Omadacycline andThe Annals of pharmacotherapy · 2023
    Pooled it
  2. Trial
  3. Trial
  4. Article
  5. Antibiotics (Basel, Switzerland) · 2026
    Article
  6. Clostridioides difficile pathogenesis and control.Nature reviews. Microbiology · 2026
    Review
  7. Article
  8. Article
  9. Biomedicines · 2025
    Review
  10. Increase ofMicrobiology spectrum · 2025
    Article
  11. Article
  12. Community-AcquiredInternational journal of molecular sciences · 2025
    Review
  13. Identification of a family of peptidoglycan transpeptidases reveals thatProceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  14. Article
  15. Reduced Vancomycin Susceptibility in Clostridioides difficile Is Associated With Lower Rates of Initial Cure and Sustained Clinical Response.Clinical infectious diseases : an official publication of the Infectious Diseases Society of America · 2024
    Article
  16. Clinical microbiology reviews · 2024
    Review
  17. Article
  18. Article
  19. Article
  20. Antimicrobial agents and chemotherapy · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 1 country.

Wan-Jou ShenCenter for Infectious and Inflammatory Diseases, Institute of Biosciences and Technology, Texas A&M Health Science Center, Houston, TX 77030, USA.
Aditi DeshpandeCenter for Infectious and Inflammatory Diseases, Institute of Biosciences and Technology, Texas A&M Health Science Center, Houston, TX 77030, USA.
Kirk E HevenerDepartment of Pharmaceutical Sciences, College of Pharmacy, University of Tennessee Health Science Center, Memphis, TN 38105, USA.
Bradley T EndresDepartment of Pharmacy Practice and Translational Research, College of Pharmacy, University of Houston, Houston, TX 77204, USA.
Kevin W GareyDepartment of Pharmacy Practice and Translational Research, College of Pharmacy, University of Houston, Houston, TX 77204, USA.
Kelli L PalmerDepartment of Biological Sciences, University of Texas at Dallas, Richardson, TX 75080, USA.
Julian G HurdleCenter for Infectious and Inflammatory Diseases, Institute of Biosciences and Technology, Texas A&M Health Science Center, Houston, TX 77030, USA.
Texas A&M Health Science Center · USUniversity of Houston · USThe University of Texas at Dallas · USUniversity of Tennessee Health Science Center · US

Funding

Diversity Supplement: Decoding the clinical impact of the recent evolution of metronidazole resistance on Clostridium difficile infectionR01AI139261 · NIAID · TEXAS A&M UNIVERSITY HEALTH SCIENCE CTR · PI Kevin W Garey, Julian G Hurdle · 2018 to 2026
$6.0M
Genome defense and acquired antibiotic resistance in Enterococcus faecalis and Enterococcus faeciumR01AI116610 · NIAID · UNIVERSITY OF TEXAS DALLAS · PI PALMER, KELLI LEA · 2015 to 2019
$1.9M
Relationships Among Metronidazole Resistance, Pharmacodynamics and Treatment Outcomes in Clostridium difficile InfectionR56AI126881 · NIAID · TEXAS A&M UNIVERSITY HEALTH SCIENCE CTR · PI HURDLE, JULIAN G · 2017 to 2017
$608k
NIAID NIH HHS R01 AI116610NIAID NIH HHS R01 AI139261NIAID NIH HHS R56 AI126881
6 · The paper itself

Abstract

objectivesTo describe, for the first time (to the best of our knowledge), the genetic mechanisms of vancomycin resistance in clinical isolates of Clostridioides difficile ribotype 027.

methodsClinical isolates and laboratory mutants were analysed: genomically to identify resistance mutations; by transcriptional analysis of vanGCd, the vancomycin resistance operon encoding lipid II d-alanine-d-serine that is less bound by vancomycin than native lipid II d-alanine-d-alanine; by imaging of vancomycin binding to cell walls; and for changes in vancomycin bactericidal activity and autolysis.

resultsVancomycin-resistant laboratory mutants and clinical isolates acquired mutations to the vanSR two-component system that regulates vanGCd. The substitutions impaired VanSR's function, resulting in constitutive transcription of vanGCd. Resistance was reversed by silencing vanG, encoding d-alanine-d-serine ligase in the vanGCd operon. In resistant cells, vancomycin was less bound to the cell wall septum, the site where vancomycin interacts with lipid II. Vancomycin's bactericidal activity was reduced against clinical isolates and laboratory mutants (64 and ≥1024 mg/L, respectively) compared with WT strains (4 mg/L). Truncation of the potassium transporter TrkA occurred in laboratory mutants, which were refractory to autolysis, accounting for their survival in high drug concentrations.

conclusionsRibotype 027 evolved first-step resistance to vancomycin by constitutively expressing vanGCd, which is otherwise silent. Experimental evolutions and bactericidal assays show that ribotype 027 can acquire mutations to drastically enhance its tolerance to vancomycin. Thus, further epidemiological studies are warranted to examine the extent to which vancomycin resistance impacts clinical outcomes and the potential for these strains to evolve higher-level resistance, which would be devastating.

Indexed as

ClostridioidesVancomycin ResistanceAnti-Bacterial AgentsBacterial ProteinsMicrobial Sensitivity TestsOperonVancomycinAnti-Bacterial AgentsBacterial ProteinsVancomycin

Identifiers

PMID31873741
PMCPMC7069472
OpenAlexW2998690899

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.