Evidence map›Paper›PMID 31873299›Full record

ArticleNature genetics2020

Resequencing of 683 common bean genotypes identifies yield component trait associations across a north-south cline.

Jing Wu, Lanfen Wang, Junjie Fu, Jibao Chen, Shuhong Wei, Shilong Zhang, Jie Zhang, Yongsheng Tang, Mingli Chen, Jifeng Zhu and 12 more

Abstract read
PubMed Publisher
In one paragraph

Article in Nature genetics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 61 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
61citing papers in PubMed, 2 pooled it
21.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

61 citing papers in PubMed, 2 syntheses or guidelines pooled it, 125 citations in OpenAlex.

  1. Pooled it
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  8. Genetic control of stem elongation in common bean and the influence of age and flowering time.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025
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  9. Genomic Prediction of Adaptation in Common Bean (International journal of molecular sciences · 2025
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1 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors at 5 institutions in 2 countries.

Jing Wu *Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, China.ORCID http://orcid.org/0000-0003-1593-1409
Lanfen Wang *Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, China.ORCID http://orcid.org/0000-0002-6086-8261
Junjie Fu *Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, China.ORCID http://orcid.org/0000-0002-4702-2392
Jibao ChenKey Laboratory of Water Ecological Security for Water Region of Mid-line Project of South-to-North Water Diversion, Nanyang Normal University, Nanyang, China.ORCID http://orcid.org/0000-0002-4656-822X
Shuhong WeiInstitute of Crop Germplasm, Heilongjiang Academy of Agricultural Sciences, Harbin, China.ORCID http://orcid.org/0000-0001-7951-5741
Shilong ZhangBijie Academy of Agricultural Sciences, Bijie, China.
Jie ZhangInstitute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, China.
Yongsheng TangQujing Academy of Agricultural Sciences, Qujing, China.
Mingli ChenInstitute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, China.ORCID http://orcid.org/0000-0002-0169-1814
Jifeng ZhuInstitute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, China.ORCID http://orcid.org/0000-0001-9825-6941
Lei LeiInstitute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, China.ORCID http://orcid.org/0000-0003-3304-1733
Qinghe GengInstitute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, China.ORCID http://orcid.org/0000-0002-7125-6949
Chunliang LiuInstitute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, China.
Lei WuInstitute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, China.
Xiaoming LiInstitute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, China.ORCID http://orcid.org/0000-0003-1187-2237
Xiaoli WangInstitute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, China.
Qiang WangInstitute of Crop Germplasm, Heilongjiang Academy of Agricultural Sciences, Harbin, China.ORCID http://orcid.org/0000-0001-7240-6024
Zhaoli WangBijie Academy of Agricultural Sciences, Bijie, China.
Shilai XingBerry Genomics Co. Ltd, Beijing, China.ORCID http://orcid.org/0000-0002-0869-1120
Haikuan ZhangBerry Genomics Co. Ltd, Beijing, China.ORCID http://orcid.org/0000-0001-9907-8630
Matthew W BlairDepartment of Agricultural & Environmental Sciences, Tennessee State University, Nashville, TN, USA. mwbeans@gmail.com.ORCID http://orcid.org/0000-0003-3655-3726
Shumin WangInstitute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, China. wangshumin@caas.cn.ORCID http://orcid.org/0000-0003-3798-6048
Chinese Academy of Agricultural Sciences · CNBerry Oncology (China) · CNNanyang Normal University · CNQujing Normal University · CNTennessee State University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We conducted a large-scale genome-wide association study evaluation of 683 common bean accessions, including landraces and breeding lines, grown over 3 years and in four environments across China, ranging in latitude from 18.23° to 45.75° N, with different planting dates and abiotic or biotic stresses. A total of 505 loci were associated with yield components, of which seed size, flowering time and harvest maturity traits were stable across years and environments. Some loci aligned with candidate genes controlling these traits. Yield components were observed to have strong associations with a gene-rich region on the long arm of chromosome 1. Manipulation of seed size, through selection of seed length versus seed width and height, was deemed possible, providing a genome-based means to select for important yield components. This study shows that evaluation of large germplasm collections across north-south geographic clines is useful in the detection of marker associations that determine grain yield in pulses.

Indexed as

Genetics, PopulationGenome, PlantPolymorphism, Single NucleotideQuantitative Trait LociChromosome MappingChromosomes, PlantGenome-Wide Association StudyGenotypePhaseolusPhenotypeSequence Analysis, DNA

Identifiers

PMID31873299
OpenAlexW2994965769

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.