Evidence map›Paper›PMID 31873125›Full record

ArticleScientific reports2019

Structural basis of methotrexate and pemetrexed action on serine hydroxymethyltransferases revealed using plant models.

Milosz Ruszkowski, Bartosz Sekula, Agnieszka Ruszkowska, Roberto Contestabile, Isabel Nogues, Sebastiana Angelaccio, Andrzej Szczepaniak, Zbigniew Dauter

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.6field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 17 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 4 countries.

Milosz RuszkowskiSynchrotron Radiation Research Section of MCL, National Cancer Institute, Argonne, IL, USA. mruszkowski@ibch.poznan.pl.ORCID http://orcid.org/0000-0002-4415-3100
Bartosz SekulaSynchrotron Radiation Research Section of MCL, National Cancer Institute, Argonne, IL, USA.
Agnieszka RuszkowskaInstitute of Bioorganic Chemistry, Polish Academy of Sciences, Poznan, Poland.
Roberto ContestabileDepartment of Biochemical Sciences "A. Rossi Fanelli", Sapienza University of Rome, Laboratory affiliated to Istituto Pasteur Italia-Fondazione Cenci Bolognetti, P.le Aldo Moro 5, 00185, Roma, Italy.
Isabel NoguesResearch Institute of Terrestrial Ecosystems, Italian National Research Council, Via Salaria Km. 29, 300-00015, Monterotondo Scalo, Roma, Italy.
Sebastiana AngelaccioDepartment of Biochemical Sciences "A. Rossi Fanelli", Sapienza University of Rome, Laboratory affiliated to Istituto Pasteur Italia-Fondazione Cenci Bolognetti, P.le Aldo Moro 5, 00185, Roma, Italy.
Andrzej SzczepaniakDepartment of Hematology and Bone Marrow Transplantation, Poznan University of Medical Sciences, Poznan, Poland.
Zbigniew DauterSynchrotron Radiation Research Section of MCL, National Cancer Institute, Argonne, IL, USA.
Argonne National Laboratory · USIstituto Pasteur · ITNational Research Council · ITPoznan University of Medical Sciences · PLUniversity of Notre Dame · US

Funding

Elucidating the Inhibitory Mechanisms of RNA Triple Helices in Nuclear DecayR00GM111430 · NIGMS · UNIVERSITY OF NOTRE DAME · PI BROWN, JESSICA ANN · 2016 to 2018
$743k
NIGMS NIH HHS R00 GM111430
6 · The paper itself

Abstract

Serine hydroxymethyltransferases (SHMTs) reversibly transform serine into glycine in a reaction accompanied with conversion of tetrahydrofolate (THF) into 5,10-methylene-THF (5,10-meTHF). In vivo, 5,10-meTHF is the main carrier of one-carbon (1C) units, which are utilized for nucleotide biosynthesis and other processes crucial for every living cell, but hyperactivated in overproliferating cells (e.g. cancer tissues). SHMTs are emerging as a promising target for development of new drugs because it appears possible to inhibit growth of cancer cells by cutting off the supply of 5,10-meTHF. Methotrexate (MTX) and pemetrexed (PTX) are two examples of antifolates that have cured many patients over the years but target different enzymes from the folate cycle (mainly dihydrofolate reductase and thymidylate synthase, respectively). Here we show crystal structures of MTX and PTX bound to plant SHMT isozymes from cytosol and mitochondria-human isozymes exist in the same subcellular compartments. We verify inhibition of the studied isozymes by a thorough kinetic analysis. We propose to further exploit antifolate scaffold in development of SHMT inhibitors because it seems likely that especially polyglutamylated PTX inhibits SHMTs in vivo. Structure-based optimization is expected to yield novel antifolates that could potentially be used as chemotherapeutics.

Indexed as

ArabidopsisArabidopsis ProteinsCrystallography, X-RayGlycine HydroxymethyltransferaseHumansIsoenzymesMedicago truncatulaMethotrexatePemetrexedArabidopsis ProteinsGlycine HydroxymethyltransferaseIsoenzymesMethotrexatePemetrexed

Identifiers

PMID31873125
PMCPMC6928210
OpenAlexW2998525774

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.