Evidence map›Paper›PMID 31872202›Full record

ArticleLab on a chip2020

Rapid bacterial detection and antibiotic susceptibility testing in whole blood using one-step, high throughput blood digital PCR.

Timothy J Abram, Hemanth Cherukury, Chen-Yin Ou, Tam Vu, Michael Toledano, Yiyan Li, Jonathan T Grunwald, Melody N Toosky, Delia F Tifrea, Anatoly Slepenkin and 11 more

Open access · greenAbstract read
In one paragraph

Article in Lab on a chip, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers.

0numbers the graph read from it
0cells of the map it votes in
51citing papers in PubMed
8.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

51 citing papers in PubMed, 127 citations in OpenAlex.

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  13. Detection and quantification ofThe veterinary quarterly · 2024
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  15. A Novel Truncated CHAP Modular Endolysin, CHAPJournal of microbiology and biotechnology · 2024
    Article
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  20. Observational
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 3 institutions in 1 country.

Timothy J AbramVelox Biosystems, 5 Mason, Suite 160, Irvine, CA 92618, USA. tabram@veloxbio.com.
Hemanth CherukurySue and Bill Gross Stem Cell Research Center, University of California, Irvine, 845 Health Sciences Road, Suite 3027, Irvine, CA 92697, USA. weianz@uci.edu and Department of Pharmaceutical Sciences, University of California, Irvine, Irvine, CA 92697, USA.
Chen-Yin OuVelox Biosystems, 5 Mason, Suite 160, Irvine, CA 92618, USA. tabram@veloxbio.com.
Tam VuSue and Bill Gross Stem Cell Research Center, University of California, Irvine, 845 Health Sciences Road, Suite 3027, Irvine, CA 92697, USA. weianz@uci.edu and Department of Biomedical Engineering, University of California, Irvine, Irvine, CA 92697, USA.
Michael ToledanoSue and Bill Gross Stem Cell Research Center, University of California, Irvine, 845 Health Sciences Road, Suite 3027, Irvine, CA 92697, USA. weianz@uci.edu.
Yiyan LiSue and Bill Gross Stem Cell Research Center, University of California, Irvine, 845 Health Sciences Road, Suite 3027, Irvine, CA 92697, USA. weianz@uci.edu and Department of Physics and Engineering, Fort Lewis College, Durango, CO 81301, USA.
Jonathan T GrunwaldVelox Biosystems, 5 Mason, Suite 160, Irvine, CA 92618, USA. tabram@veloxbio.com.
Melody N TooskyVelox Biosystems, 5 Mason, Suite 160, Irvine, CA 92618, USA. tabram@veloxbio.com.
Delia F TifreaDepartment of Pathology and Laboratory Medicine, University of California, Irvine, CA 92697, USA.
Anatoly SlepenkinDepartment of Pathology and Laboratory Medicine, University of California, Irvine, CA 92697, USA.
Jonathan ChongSue and Bill Gross Stem Cell Research Center, University of California, Irvine, 845 Health Sciences Road, Suite 3027, Irvine, CA 92697, USA. weianz@uci.edu.
Lingshun KongSue and Bill Gross Stem Cell Research Center, University of California, Irvine, 845 Health Sciences Road, Suite 3027, Irvine, CA 92697, USA. weianz@uci.edu.
Domenica Vanessa Del PozoSue and Bill Gross Stem Cell Research Center, University of California, Irvine, 845 Health Sciences Road, Suite 3027, Irvine, CA 92697, USA. weianz@uci.edu.
Kieu Thai LaSue and Bill Gross Stem Cell Research Center, University of California, Irvine, 845 Health Sciences Road, Suite 3027, Irvine, CA 92697, USA. weianz@uci.edu.
Louai LabaniehSue and Bill Gross Stem Cell Research Center, University of California, Irvine, 845 Health Sciences Road, Suite 3027, Irvine, CA 92697, USA. weianz@uci.edu.
Jan ZimakSue and Bill Gross Stem Cell Research Center, University of California, Irvine, 845 Health Sciences Road, Suite 3027, Irvine, CA 92697, USA. weianz@uci.edu.
Byron ShenVelox Biosystems, 5 Mason, Suite 160, Irvine, CA 92618, USA. tabram@veloxbio.com.
Susan S HuangDivision of Infectious Diseases, UCI School of Medicine, Irvine, CA 92697, USA.
Enrico GrattonDepartment of Biomedical Engineering, University of California, Irvine, Irvine, CA 92697, USA and Laboratory for Fluorescence Dynamics, University of California, Irvine, CA 92697, USA.
Ellena M PetersonDepartment of Pathology and Laboratory Medicine, University of California, Irvine, CA 92697, USA.
Weian ZhaoSue and Bill Gross Stem Cell Research Center, University of California, Irvine, 845 Health Sciences Road, Suite 3027, Irvine, CA 92697, USA. weianz@uci.edu and Department of Pharmaceutical Sciences, University of California, Irvine, Irvine, CA 92697, USA and Department of Biomedical Engineering, University of California, Irvine, Irvine, CA 92697, USA and Chao Family Comprehensive Cancer Center, University of California, Irvine, Irvine, CA 92697, USA and Edwards Life Sciences Center for Advanced Cardiovascular Technology, University of California, Irvine, Irvine, CA 92697, USA and Department of Biological Chemistry, University of California, Irvine, Irvine, CA 92697, USA.ORCID 0000-0002-7794-9914
Irvine Valley College · USFluor (United States) · USFort Lewis College · US

Funding

TRD4: Phasor analysisP41GM103540 · NIGMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI GRATTON, ENRICO · 2012 to 2020
$12.5M
Integrated Comprehensive Droplet Digital Detection (IC 3D) system for rapid detection of bacteria andantimicrobial resistanceR01AI117061 · NIAID · UNIVERSITY OF CALIFORNIA-IRVINE · PI ZHAO, WEIAN · 2015 to 2019
$5.1M
NRSA Training CoreTL1TR001415 · NCATS · UNIVERSITY OF CALIFORNIA-IRVINE · PI CAIOZZO, VINCENT JAMES, HEAD, ELIZABETH · 2015 to 2023
$4.2M
NCATS NIH HHS TL1 TR001415NIAID NIH HHS R01 AI117061NIGMS NIH HHS P41 GM103540
6 · The paper itself

Abstract

Sepsis due to antimicrobial resistant pathogens is a major health problem worldwide. The inability to rapidly detect and thus treat bacteria with appropriate agents in the early stages of infections leads to excess morbidity, mortality, and healthcare costs. Here we report a rapid diagnostic platform that integrates a novel one-step blood droplet digital PCR assay and a high throughput 3D particle counter system with potential to perform bacterial identification and antibiotic susceptibility profiling directly from whole blood specimens, without requiring culture and sample processing steps. Using CTX-M-9 family ESBLs as a model system, we demonstrated that our technology can simultaneously achieve unprecedented high sensitivity (10 CFU per ml) and rapid sample-to-answer assay time (one hour). In head-to-head studies, by contrast, real time PCR and BioRad ddPCR only exhibited a limit of detection of 1000 CFU per ml and 50-100 CFU per ml, respectively. In a blinded test inoculating clinical isolates into whole blood, we demonstrated 100% sensitivity and specificity in identifying pathogens carrying a particular resistance gene. We further demonstrated that our technology can be broadly applicable for targeted detection of a wide range of antibiotic resistant genes found in both Gram-positive (vanA, nuc, and mecA) and Gram-negative bacteria, including ESBLs (bla

Indexed as

Polymerase Chain ReactionAnti-Bacterial AgentsEnterobacteriaceaeHumansLab-On-A-Chip DevicesMethicillin-Resistant Staphylococcus aureusMicrofluidic Analytical TechniquesParticle SizeSurface PropertiesVancomycin-Resistant EnterococciAnti-Bacterial Agents

Identifiers

PMID31872202
PMCPMC7250044
OpenAlexW2996713594

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.