Evidence map›Paper›PMID 31871210›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2020

Identification of Ppar

Ivana Winkler, Catrin Bitter, Sebastian Winkler, Dieter Weichenhan, Abhishek Thavamani, Jan G Hengstler, Erawan Borkham-Kamphorst, Oliver Kohlbacher, Christoph Plass, Robert Geffers and 2 more

Open access · hybridAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 33 citations in OpenAlex.

  1. Article
  2. Unique miRomics Expression Profiles inInternational journal of molecular sciences · 2023
    Article
  3. Review
  4. Article
  5. Article
  6. miR-338-3p blocks TGFβ-induced myofibroblast differentiation through the induction of PTEN.American journal of physiology. Lung cellular and molecular physiology · 2022
    Article
  7. Review
  8. Article
  9. Article
  10. Protective Effects of PPAROxidative medicine and cellular longevity · 2022
    Article
  11. Review
  12. MicroRNAs: The Link between the Metabolic Syndrome and Oncogenesis.International journal of molecular sciences · 2021
    Review
  13. Non-coding RNA crosstalk with nuclear receptors in liver disease.Biochimica et biophysica acta. Molecular basis of disease · 2021
    Review
  14. Review
  15. Article
  16. Review
  17. Article
  18. Review
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 6 institutions in 1 country.

Ivana WinklerDepartment for Molecular Biology, Interfaculty Institute of Cell Biology, Eberhard Karls University Tübingen, 72076 Tübingen, Germany.
Catrin BitterDepartment for Molecular Biology, Interfaculty Institute of Cell Biology, Eberhard Karls University Tübingen, 72076 Tübingen, Germany.
Sebastian WinklerInternational Max Planck Research School, 72076 Tübingen, Germany.
Dieter WeichenhanCancer Epigenomics, German Cancer Research Center, 69120 Heidelberg, Germany.
Abhishek ThavamaniDepartment for Molecular Biology, Interfaculty Institute of Cell Biology, Eberhard Karls University Tübingen, 72076 Tübingen, Germany.
Jan G HengstlerDepartment of Toxicology, Leibniz Research Centre for Working Environment and Human Factors (IfADo), 44139 Dortmund, Germany.
Erawan Borkham-KamphorstExperimental Gene Therapy and Clinical Chemistry, Institute of Molecular Pathobiochemistry, University Hospital Aachen, 52074 Aachen, Germany.
Oliver KohlbacherInternational Max Planck Research School, 72076 Tübingen, Germany.ORCID 0000-0003-1739-4598
Christoph PlassCancer Epigenomics, German Cancer Research Center, 69120 Heidelberg, Germany.
Robert GeffersGenome Analytics Unit, Helmholtz Center for Infection Research, 38124 Braunschweig, Germany.
Ralf WeiskirchenExperimental Gene Therapy and Clinical Chemistry, Institute of Molecular Pathobiochemistry, University Hospital Aachen, 52074 Aachen, Germany.ORCID 0000-0003-3888-0931
Alfred NordheimDepartment for Molecular Biology, Interfaculty Institute of Cell Biology, Eberhard Karls University Tübingen, 72076 Tübingen, Germany; alfred.nordheim@uni-tuebingen.de.
German Cancer Research Center · DEUniversitätsklinikum Aachen · DEHelmholtz Centre for Infection Research · DEMax Planck Institute for Biology · DEMax Planck Institute for Developmental Biology · DETU Dortmund University · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Liver fibrosis interferes with normal liver function and facilitates hepatocellular carcinoma (HCC) development, representing a major threat to human health. Here, we present a comprehensive perspective of microRNA (miRNA) function on targeting the fibrotic microenvironment. Starting from a murine HCC model, we identify a miRNA network composed of 8 miRNA hubs and 54 target genes. We show that let-7, miR-30, miR-29c, miR-335, and miR-338 (collectively termed antifibrotic microRNAs [AF-miRNAs]) down-regulate key structural, signaling, and remodeling components of the extracellular matrix. During fibrogenic transition, these miRNAs are transcriptionally regulated by the transcription factor Pparγ and thus we identify a role of Pparγ as regulator of a functionally related class of AF-miRNAs. The miRNA network is active in human HCC, breast, and lung carcinomas, as well as in 2 independent mouse liver fibrosis models. Therefore, we identify a miRNA:mRNA network that contributes to formation of fibrosis in tumorous and nontumorous organs of mice and humans.

Indexed as

Gene Expression Regulation, NeoplasticAnimalsBreast NeoplasmsCarcinoma, HepatocellularCpG IslandsDatasets as TopicDisease Models, AnimalDNA MethylationEpigenesis, GeneticExtracellular MatrixFemaleHepatic Stellate CellsHumansLiverLiver CirrhosisLiver NeoplasmsMicroRNAsPPAR gammaPparg protein, mousefibrosishepatocellular carcinomamicroRNAsPPARγ

Identifiers

PMID31871210
PMCPMC6955372
OpenAlexW2998560359

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.