Evidence map›Paper›PMID 31871207›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2020

Microsecond-timescale simulations suggest 5-HT-mediated preactivation of the 5-HT

Nicholas B Guros, Arvind Balijepalli, Jeffery B Klauda

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.9field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 28 citations in OpenAlex.

  1. Review
  2. Human GlyRα2 pore dynamics in gating and inhibition.Structure (London, England : 1993) · 2026
    Article
  3. Review
  4. Serotonin Signaling through Lipid Membranes.ACS chemical neuroscience · 2024
    Review
  5. Article
  6. Review
  7. Article
  8. Article
  9. Tapping into 5-HTInternational journal of molecular sciences · 2021
    Review
  10. Article
  11. Article
  12. Article
  13. Tracking Membrane Protein Dynamics in Real Time.The Journal of membrane biology · 2021
    Review
  14. Article
  15. Article
  16. Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Nicholas B GurosDepartment of Chemical and Biomolecular Engineering, University of Maryland, College Park, MD 20742.
Arvind BalijepalliBiophysics Group, Microsystems and Nanotechnology Division, National Institute of Standards and Technology, Gaithersburg, MD 20899.
Jeffery B KlaudaDepartment of Chemical and Biomolecular Engineering, University of Maryland, College Park, MD 20742; jbklauda@umd.edu.ORCID 0000-0001-8725-1870
National Institute of Standards and Technology · USUniversity of Maryland, College Park · US

Funding

Breakthrough Molecular Dynamics Research via an Anton2 SupercomputerR01GM116961 · NIGMS · CARNEGIE-MELLON UNIVERSITY · PI BLOOD, PHILIP D. · 2016 to 2023
$3.0M
NIGMS NIH HHS R01 GM116961
6 · The paper itself

Abstract

Aided by efforts to improve their speed and efficiency, molecular dynamics (MD) simulations provide an increasingly powerful tool to study the structure-function relationship of pentameric ligand-gated ion channels (pLGICs). However, accurate reporting of the channel state and observation of allosteric regulation by agonist binding with MD remains difficult due to the timescales necessary to equilibrate pLGICs from their artificial and crystalized conformation to a more native, membrane-bound conformation in silico. Here, we perform multiple all-atom MD simulations of the homomeric 5-hydroxytryptamine 3A (5-HT

Indexed as

Ion Channel GatingMolecular Dynamics SimulationAllosteric RegulationMembranes, ArtificialProtein DomainsReceptors, Serotonin, 5-HT3SerotoninTime FactorsHtr3a protein, mouseMembranes, ArtificialReceptors, Serotonin, 5-HT3Serotoninligand-gated ion channelmolecular dynamicspreactivationpriming

Identifiers

PMID31871207
PMCPMC6955379
OpenAlexW2997883249

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.