Evidence map›Paper›PMID 31871051›Full record

ArticleThe Journal of biological chemistry2020

The pentose phosphate pathway of cellulolytic clostridia relies on 6-phosphofructokinase instead of transaldolase.

Jeroen G Koendjbiharie, Shuen Hon, Martin Pabst, Robert Hooftman, David M Stevenson, Jingxuan Cui, Daniel Amador-Noguez, Lee R Lynd, Daniel G Olson, Richard van Kranenburg

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 39 citations in OpenAlex.

  1. Article
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  5. 2-Deoxy-4-ACS chemical biology · 2024
    Article
  6. Article
  7. International journal of systematic and evolutionary microbiology · 2024
    Article
  8. Review
  9. The potential of native and engineered Clostridia for biomass biorefining.Frontiers in bioengineering and biotechnology · 2024
    Review
  10. Article
  11. Article
  12. Functional Analysis of HApplied and environmental microbiology · 2022
    Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 6 institutions in 2 countries.

Jeroen G KoendjbiharieCorbion, 4206 AC Gorinchem, The Netherlands.
Shuen HonThayer School of Engineering, Dartmouth College, Hanover, New Hampshire 03755; Center for Bioenergy Innovation, Oak Ridge National Laboratories, Oak Ridge, Tennessee 37830.
Martin PabstCell Systems Engineering, Delft University of Technology, 2629 HZ Delft, The Netherlands.
Robert HooftmanLaboratory of Microbiology, Wageningen University & Research, 6708 WE Wageningen, The Netherlands.
David M StevensonDepartment of Bacteriology, University of Wisconsin-Madison, Madison, Wisconsin 53706.
Jingxuan CuiCenter for Bioenergy Innovation, Oak Ridge National Laboratories, Oak Ridge, Tennessee 37830; Department of Biological Sciences, Dartmouth College, Hanover, New Hampshire, 03755.
Daniel Amador-NoguezCenter for Bioenergy Innovation, Oak Ridge National Laboratories, Oak Ridge, Tennessee 37830; Department of Bacteriology, University of Wisconsin-Madison, Madison, Wisconsin 53706.
Lee R LyndThayer School of Engineering, Dartmouth College, Hanover, New Hampshire 03755; Center for Bioenergy Innovation, Oak Ridge National Laboratories, Oak Ridge, Tennessee 37830; Department of Biological Sciences, Dartmouth College, Hanover, New Hampshire, 03755.
Daniel G OlsonThayer School of Engineering, Dartmouth College, Hanover, New Hampshire 03755; Center for Bioenergy Innovation, Oak Ridge National Laboratories, Oak Ridge, Tennessee 37830.
Richard van KranenburgCorbion, 4206 AC Gorinchem, The Netherlands; Laboratory of Microbiology, Wageningen University & Research, 6708 WE Wageningen, The Netherlands. Electronic address: richard.van.kranenburg@corbion.com.
Dartmouth College · USCorbion (Netherlands) · NLDelft University of Technology · NLOak Ridge National Laboratory · USUniversity of Wisconsin–Madison · USWageningen University & Research · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The genomes of most cellulolytic clostridia do not contain genes annotated as transaldolase. Therefore, for assimilating pentose sugars or for generating C

Indexed as

Acetivibrio thermocellusDihydroxyacetone PhosphateEscherichia coliEubacterialesFructose-Bisphosphate AldolaseFructosephosphatesKineticsPentose Phosphate PathwayPentosesPhosphofructokinase-1PhosphotransferasesRiboseSugar PhosphatesTransaldolaseXyloseDihydroxyacetone Phosphateerythrose 4-phosphatefructose-6-phosphateFructose-Bisphosphate AldolaseFructosephosphatesPentosesPhosphofructokinase-1Phosphotransferasespyrophosphate-fructose 6-phosphate 1-phosphotransferaseRibosesedoheptulose 1,7-bisphosphatesedoheptulose 7-phosphateSugar PhosphatesTransaldolaseXylosebacterial metabolismClostridium thermocellumClostridium thermosuccinogenesenzyme kineticsmass spectrometry (MS)pentose phosphate pathway (PPP)phosphofructokinasepyrophosphatesedoheptulose 1,7-bisphosphatetransaldolase

Identifiers

PMID31871051
PMCPMC7029132
OpenAlexW2997532199

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.