Evidence map›Paper›PMID 31870539›Full record

ArticleBiophysical journal2020

Sensitive Detection of Protein Binding to the Plasma Membrane with Dual-Color Z-Scan Fluorescence.

Isaac Angert, Siddarth Reddy Karuka, Jared Hennen, Yan Chen, Joseph P Albanesi, Louis M Mansky, Joachim D Mueller

Open access · bronzeAbstract read
In one paragraph

Article in Biophysical journal, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.3field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Isaac AngertSchool of Physics and Astronomy, University of Minnesota, Minneapolis, Minnesota.
Siddarth Reddy KarukaSchool of Physics and Astronomy, University of Minnesota, Minneapolis, Minnesota.
Jared HennenSchool of Physics and Astronomy, University of Minnesota, Minneapolis, Minnesota.
Yan ChenSchool of Physics and Astronomy, University of Minnesota, Minneapolis, Minnesota; Institute for Molecular Virology, University of Minnesota, Minneapolis, Minnesota.
Joseph P AlbanesiDepartment of Pharmacology, University of Texas Southwestern Medical Center, Dallas, Texas.
Louis M ManskyInstitute for Molecular Virology, University of Minnesota, Minneapolis, Minnesota; Division of Basic Sciences, University of Minnesota, Minneapolis, Minnesota; School of Dentistry, University of Minnesota, Minneapolis, Minnesota.
Joachim D MuellerSchool of Physics and Astronomy, University of Minnesota, Minneapolis, Minnesota; Institute for Molecular Virology, University of Minnesota, Minneapolis, Minnesota; Department of Biomedical Engineering, University of Minnesota, Minneapolis, Minnesota. Electronic address: mueller@physics.umn.edu.
University of Minnesota · USThe University of Texas Southwestern Medical Center · US

Funding

In vivo Fluorescence Fluctuation Spectroscopy - Administrative SupplementR01GM064589 · NIGMS · UNIVERSITY OF MINNESOTA TWIN CITIES · PI MUELLER, JOACHIM D · 2002 to 2019
$4.6M
Minnesota Training Program in VirologyT32AI083196 · NIAID · UNIVERSITY OF MINNESOTA · PI Louis M Mansky · 2010 to 2026
$3.2M
PI4KIIα in Late Stage AutophagyR01GM121536 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI ALBANESI, JOSEPH P, MUELLER, JOACHIM D · 2017 to 2020
$1.5M
HIV Gag lattice morphology and particle biogenesis - Administrative SupplementR01GM124279 · NIGMS · UNIVERSITY OF MINNESOTA · PI MANSKY, LOUIS M., MUELLER, JOACHIM D · 2017 to 2018
$1.4M
NIAID NIH HHS T32 AI083196NIGMS NIH HHS R01 GM064589NIGMS NIH HHS R01 GM121536NIGMS NIH HHS R01 GM124279
6 · The paper itself

Abstract

Delicate and transitory protein engagement at the plasma membrane (PM) is crucial to a broad range of cellular functions, including cell motility, signal transduction, and virus replication. Here, we describe a dual-color (DC) extension of the fluorescence z-scan technique, which has proven successful for quantification of peripheral membrane protein binding to the PM in living cells. We demonstrate that the coexpression of a second, distinctly colored fluorescent protein provides a soluble reference species that delineates the extent of the cell cytoplasm and lowers the detection threshold of z-scan PM-binding measurements by an order of magnitude. DC z-scan generates an intensity profile for each detection channel that contains information on the axial distribution of the peripheral membrane and reference protein. Fit models for DC z-scan are developed and verified using simple model systems. Next, we apply the quantitative DC z-scan technique to investigate the binding of two peripheral membrane protein systems for which previous z-scan studies failed to detect binding: human immunodeficiency virus type 1 (HIV-1) matrix (MA) protein and lipidation-deficient mutants of the fibroblast growth factor receptor substrate 2α. Our findings show that these mutations severely disrupt PM association of fibroblast growth factor receptor substrate 2α but do not eliminate it. We further detected binding of HIV-1 MA to the PM using DC z-scan. Interestingly, our data indicate that HIV-1 MA binds cooperatively to the PM with a dissociation coefficient of K

Indexed as

Cell MembraneColorHeLa CellsHumansMembrane ProteinsProtein BindingSpectrometry, FluorescenceMembrane Proteins

Identifiers

PMID31870539
PMCPMC6976807
OpenAlexW2995716894

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.