Evidence map›Paper›PMID 31869219›Full record

ArticleBiochemistry2020

Water Networks and Correlated Motions in Mutant Isocitrate Dehydrogenase 1 (IDH1) Are Critical for Allosteric Inhibitor Binding and Activity.

Jennifer M Chambers, Wade Miller, Giovanni Quichocho, Viraj Upadhye, Diego Avellaneda Matteo, Andrey A Bobkov, Christal D Sohl, Jamie M Schiffer

Open access · greenAbstract read
In one paragraph

Article in Biochemistry, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.2field-weighted citation impact, top 53% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 6 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 1 country.

Jennifer M ChambersSchrödinger , 120 West 45th Street , New York , New York 10036 , United States.
Wade MillerSchrödinger , 222 Third Street, Suite 2230 , Cambridge , Massachusetts 02142 , United States.
Giovanni QuichochoDepartment of Chemistry and Biochemistry , San Diego State University , San Diego , California 92182 , United States.
Viraj UpadhyeDepartment of Chemistry and Biochemistry , San Diego State University , San Diego , California 92182 , United States.
Diego Avellaneda MatteoDepartment of Chemistry and Biochemistry , San Diego State University , San Diego , California 92182 , United States.
Andrey A BobkovSanford Burnham Prebys Medical Discovery Institute , La Jolla , California 92037 , United States.
Christal D SohlDepartment of Chemistry and Biochemistry , San Diego State University , San Diego , California 92182 , United States.ORCID 0000-0002-8048-0205
Jamie M SchifferJanssen Research and Development , 3210 Merryfield Row , San Diego , California 92121 , United States.ORCID 0000-0002-0208-6958
San Diego State University · USSchrodinger (United States) · USJanssen (United States) · USSanford Burnham Prebys Medical Discovery Institute · US

Funding

Research Education CoreU54CA132384 · NCI · SAN DIEGO STATE UNIVERSITY · PI CRIPPS, RICHARD MATTHEW, CROWE, SHEILA E. · 2008 to 2022
$20.7M
Research Education CoreU54CA132379 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI ARREDONDO, ELVA M, CROWE, SHEILA E. · 2008 to 2021
$16.1M
THE INTERSECTION OF LANGUAGE AND AFFECTR25GM058906 · NIGMS · SAN DIEGO STATE UNIVERSITY · PI TONG, WILLIAM G. · 1999 to 2021
$10.7M
Promoting wellness and resiliencyT34GM008303 · NIGMS · SAN DIEGO STATE UNIVERSITY · PI ATKINS, CATHERINE J · 1989 to 2022
$6.4M
The molecular mechanism of isocitrate dehydrogenase (lDH) mutations in cancerR00CA187594 · NCI · SAN DIEGO STATE UNIVERSITY · PI SOHL, CHRISTAL DYANE · 2015 to 2017
$693k
NCI NIH HHS R00 CA187594NCI NIH HHS U54 CA132379NCI NIH HHS U54 CA132384NIGMS NIH HHS R25 GM058906NIGMS NIH HHS T34 GM008303
6 · The paper itself

Abstract

Point mutations in human isocitrate dehydrogenase 1 (IDH1) can drive malignancies, including lower-grade gliomas and secondary glioblastomas, chondrosarcomas, and acute myeloid leukemias. These mutations, which usually affect residue R132, ablate the normal activity of catalyzing the NADP

Indexed as

Binding SitesBiophysical PhenomenaCatalysisCatalytic DomainGlutaratesHumansIsocitrate DehydrogenaseIsocitratesKetoglutaric AcidsKineticsMolecular Dynamics SimulationMutationWateralpha-hydroxyglutarateGlutaratesIDH1 protein, humanIsocitrate DehydrogenaseIsocitratesisocitric acidKetoglutaric AcidsWater

Identifiers

PMID31869219
PMCPMC8056971
OpenAlexW2998710667

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.