Evidence map›Paper›PMID 31866958›Full record

ArticleFrontiers in microbiology2019

PHI-Nets: A Network Resource for Ascomycete Fungal Pathogens to Annotate and Identify Putative Virulence Interacting Proteins and siRNA Targets.

Elzbieta I Janowska-Sejda, Artem Lysenko, Martin Urban, Chris Rawlings, Sophia Tsoka, Kim E Hammond-Kosack

Abstract read
In one paragraph

Article in Frontiers in microbiology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Review
  2. Article
  3. Understanding Host-Pathogen Interactions inPlants (Basel, Switzerland) · 2020
    Review
  4. Fungi.guru: Comparative genomic and transcriptomic resource for the fungi kingdom.Computational and structural biotechnology journal · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Elzbieta I Janowska-SejdaDepartment of Biointeractions and Crop Protection, Rothamsted Research, Harpenden, United Kingdom.
Artem LysenkoDepartment of Computational and Analytical Sciences, Rothamsted Research, Harpenden, United Kingdom.
Martin UrbanDepartment of Biointeractions and Crop Protection, Rothamsted Research, Harpenden, United Kingdom.
Chris RawlingsDepartment of Computational and Analytical Sciences, Rothamsted Research, Harpenden, United Kingdom.
Sophia TsokaDepartment of Informatics, Faculty of Natural and Mathematical Sciences, King's College London, London, United Kingdom.
Kim E Hammond-KosackDepartment of Biointeractions and Crop Protection, Rothamsted Research, Harpenden, United Kingdom.

Funding

Biotechnology and Biological Sciences Research Council BB/I000488/1
6 · The paper itself

Abstract

Interactions between proteins underlie all aspects of complex biological mechanisms. Therefore, methodologies based on complex network analyses can facilitate identification of promising candidate genes involved in phenotypes of interest and put this information into appropriate contexts. To facilitate discovery and gain additional insights into globally important pathogenic fungi, we have reconstructed computationally inferred interactomes using an interolog and domain-based approach for 15 diverse Ascomycete fungal species, across nine orders, specifically

Indexed as

biological networksgene function inferenceinteractome inferencepathogenic fungiPHI-basesmall interfering RNA

Identifiers

PMID31866958
PMCPMC6908471

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.