Evidence map›Paper›PMID 31866047›Full record

ArticleAmerican journal of human genetics2020

SYCP2 Translocation-Mediated Dysregulation and Frameshift Variants Cause Human Male Infertility.

Samantha L P Schilit, Shreya Menon, Corinna Friedrich, Tammy Kammin, Ellen Wilch, Carrie Hanscom, Sizun Jiang, Sabine Kliesch, Michael E Talkowski, Frank Tüttelmann and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in American journal of human genetics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers.

0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed
11.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

49 citing papers in PubMed, 97 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 9 institutions in 3 countries.

Samantha L P SchilitProgram in Genetics and Genomics and Certificate Program in Leder Human Biology and Translational Medicine, Biological and Biomedical Sciences Program, Graduate School of Arts and Sciences, Harvard University, Cambridge, MA 02138, USA; Harvard Medical School, Boston, MA 02115, USA.
Shreya MenonHarvard College, Harvard University, Cambridge, MA 02138, USA.
Corinna FriedrichInstitute of Human Genetics, University of Münster, 48149 Münster, Germany.
Tammy KamminDepartment of Obstetrics and Gynecology, Brigham and Women's Hospital, Boston, MA 02115, USA.
Ellen WilchDepartment of Obstetrics and Gynecology, Brigham and Women's Hospital, Boston, MA 02115, USA.
Carrie HanscomMolecular Neurogenetics Unit, Center for Genomic Medicine, Massachusetts General Hospital, Boston, MA 02114, USA.
Sizun JiangBaxter Laboratory for Stem Cell Biology, Stanford University School of Medicine, Stanford, CA 94305, USA.
Sabine KlieschCentre of Reproductive Medicine and Andrology, Department of Clinical and Surgical Andrology, University Hospital Münster, 48149 Münster, Germany.
Michael E TalkowskiMolecular Neurogenetics Unit, Center for Genomic Medicine, Massachusetts General Hospital, Boston, MA 02114, USA; Harvard Medical School, Boston, MA 02115, USA; Departments of Neurology, Psychology, and Pathology, Massachusetts General Hospital, Boston, MA 02114, USA; Medical and Population Genetics Program, Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA.
Frank TüttelmannInstitute of Human Genetics, University of Münster, 48149 Münster, Germany. Electronic address: frank.tuettelmann@ukmuenster.de.
Amy J MacQueenDepartment of Molecular Biology and Biochemistry, Wesleyan University, Middletown, CT 06459, USA.
Cynthia C MortonDepartment of Obstetrics and Gynecology, Brigham and Women's Hospital, Boston, MA 02115, USA; Harvard Medical School, Boston, MA 02115, USA; Medical and Population Genetics Program, Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA; Department of Pathology, Brigham and Women's Hospital, Boston, MA 02115, USA; Manchester Academic Health Science Centre, University of Manchester, Manchester M13 9NT, UK. Electronic address: cmorton@bwh.harvard.edu.
Brigham and Women's Hospital · USUniversity of Münster · DEBroad Institute · USHarvard University · USHarvard University Press · USMassachusetts General Hospital · USStanford University · USUniversity Hospital Münster · DEWesleyan University · US

Funding

VectorP30CA006516 · NCI · DANA-FARBER CANCER INSTITUTE · PI JENNIFER W MACK · 1985 to 2026
$330.6M
RAPID GENE DISCOVERYP01GM061354 · NIGMS · BRIGHAM AND WOMEN'S HOSPITAL · PI TALKOWSKI, MICHAEL E · 2001 to 2019
$24.3M
How Do Synaptonemal Complex Proteins Promote Crossover Recombination and Synapsis?R15GM116109 · NIGMS · WESLEYAN UNIVERSITY · PI MACQUEEN, AMY JOY · 2016 to 2025
$2.1M
Structure and Dynamics of the Synaptonemal ComplexR15GM104827 · NIGMS · WESLEYAN UNIVERSITY · PI MACQUEEN, AMY JOY · 2013 to 2013
$372k
Finding Genes for Infertility through the Developmental Genome Anatomy ProjectF31HD090780 · NICHD · HARVARD MEDICAL SCHOOL · PI SCHILIT, SAMANTHA LINN PRICE · 2017 to 2018
$64k
NCI NIH HHS P30 CA006516NICHD NIH HHS F31 HD090780NIGMS NIH HHS P01 GM061354NIGMS NIH HHS R15 GM104827NIGMS NIH HHS R15 GM116109
6 · The paper itself

Abstract

Unexplained infertility affects 2%-3% of reproductive-aged couples. One approach to identifying genes involved in infertility is to study subjects with this clinical phenotype and a de novo balanced chromosomal aberration (BCA). While BCAs may reduce fertility by production of unbalanced gametes, a chromosomal rearrangement may also disrupt or dysregulate genes important in fertility. One such subject, DGAP230, has severe oligozoospermia and 46,XY,t(20;22)(q13.3;q11.2). We identified exclusive overexpression of SYCP2 from the der(20) allele that is hypothesized to result from enhancer adoption. Modeling the dysregulation in budding yeast resulted in disrupted structural integrity of the synaptonemal complex, a common cause of defective spermatogenesis in mammals. Exome sequencing of infertile males revealed three heterozygous SYCP2 frameshift variants in additional subjects with cryptozoospermia and azoospermia. In sum, this investigation illustrates the power of precision cytogenetics for annotation of the infertile genome, suggests that these mechanisms should be considered as an alternative etiology to that of segregation of unbalanced gametes in infertile men harboring a BCA, and provides evidence of SYCP2-mediated male infertility in humans.

Indexed as

Chromosome AberrationsFrameshift MutationAdultCell Cycle ProteinsDNA-Binding ProteinsFemaleHumansInfertility, MaleKaryotypingMaleOligospermiaPedigreePhenotypeTranslocation, GeneticCell Cycle ProteinsDNA-Binding ProteinsSYCP2 protein, humanbalanced reciprocal translocationmale infertilitymeiosismolecular cytogeneticsreproductive geneticstopologically associating domain

Identifiers

PMID31866047
PMCPMC7042487
OpenAlexW2994778556

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.