Evidence map›Paper›PMID 31863157›Full record

ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2020

Fine mapping of restorer-of-fertility gene based on high-density genetic mapping and collinearity analysis in pepper (Capsicum annuum L.).

Jiaowen Cheng, Yijian Chen, Yafei Hu, Ziyan Zhou, Fang Hu, Jichi Dong, Weili Chen, Junjie Cui, Zhiming Wu, Kailin Hu

Abstract read
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In one paragraph

Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
4.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 27 citations in OpenAlex.

  1. Article
  2. Article
  3. Fertility restorer geneHorticulture research · 2024
    Article
  4. Article
  5. Article
  6. Article
  7. Fine Mapping and Gene Analysis ofInternational journal of molecular sciences · 2022
    Article
  8. Article
  9. Genome-Wide Analysis of theFrontiers in plant science · 2022
    Article
  10. Development and application of KASP markers associated withPhysiology and molecular biology of plants : an international journal of functional plant biology · 2021
    Article
  11. Fine mapping and candidate gene analysis of the up locus determining fruit orientation in pepper (Capsicum spp.).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2021
    Article
  12. Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Jiaowen Cheng *College of Horticulture, South China Agricultural University/Key Laboratory of Biology and Genetic Improvement of Horticultural Crops (South China), Ministry of Agriculture and Rural Affairs/Guangdong Vegetables Engineering Research Center/Guangdong Provincial Key Laboratory of Postharvest Science of Fruits and Vegetables, Guangzhou, 510642, China.
Yijian Chen *College of Horticulture, South China Agricultural University/Key Laboratory of Biology and Genetic Improvement of Horticultural Crops (South China), Ministry of Agriculture and Rural Affairs/Guangdong Vegetables Engineering Research Center/Guangdong Provincial Key Laboratory of Postharvest Science of Fruits and Vegetables, Guangzhou, 510642, China.
Yafei HuCollege of Horticulture, South China Agricultural University/Key Laboratory of Biology and Genetic Improvement of Horticultural Crops (South China), Ministry of Agriculture and Rural Affairs/Guangdong Vegetables Engineering Research Center/Guangdong Provincial Key Laboratory of Postharvest Science of Fruits and Vegetables, Guangzhou, 510642, China.
Ziyan ZhouCollege of Horticulture, South China Agricultural University/Key Laboratory of Biology and Genetic Improvement of Horticultural Crops (South China), Ministry of Agriculture and Rural Affairs/Guangdong Vegetables Engineering Research Center/Guangdong Provincial Key Laboratory of Postharvest Science of Fruits and Vegetables, Guangzhou, 510642, China.
Fang HuCollege of Horticulture, South China Agricultural University/Key Laboratory of Biology and Genetic Improvement of Horticultural Crops (South China), Ministry of Agriculture and Rural Affairs/Guangdong Vegetables Engineering Research Center/Guangdong Provincial Key Laboratory of Postharvest Science of Fruits and Vegetables, Guangzhou, 510642, China.
Jichi DongCollege of Horticulture, South China Agricultural University/Key Laboratory of Biology and Genetic Improvement of Horticultural Crops (South China), Ministry of Agriculture and Rural Affairs/Guangdong Vegetables Engineering Research Center/Guangdong Provincial Key Laboratory of Postharvest Science of Fruits and Vegetables, Guangzhou, 510642, China.
Weili ChenCollege of Horticulture, South China Agricultural University/Key Laboratory of Biology and Genetic Improvement of Horticultural Crops (South China), Ministry of Agriculture and Rural Affairs/Guangdong Vegetables Engineering Research Center/Guangdong Provincial Key Laboratory of Postharvest Science of Fruits and Vegetables, Guangzhou, 510642, China.
Junjie CuiDepartment of Horticulture, College of Food Science and Engineering, Foshan University, Foshan, 528200, Guangdong, China.
Zhiming WuCollege of Horticulture and Landscape Architecture, Zhongkai University of Agriculture and Engineering, Guangzhou, 510225, China.
Kailin HuCollege of Horticulture, South China Agricultural University/Key Laboratory of Biology and Genetic Improvement of Horticultural Crops (South China), Ministry of Agriculture and Rural Affairs/Guangdong Vegetables Engineering Research Center/Guangdong Provincial Key Laboratory of Postharvest Science of Fruits and Vegetables, Guangzhou, 510642, China. hukailin@scau.edu.cn.ORCID http://orcid.org/0000-0003-3490-0499
South China Agricultural University · CNFoshan University · CNZhongkai University of Agriculture and Engineering · CN

Funding

Guangzhou Science, Technology and Innovation Commission 201704020019National Natural Science Foundation of China 31372076National Natural Science Foundation of China 31672162National Natural Science Foundation of China 31701921Natural Science Foundation of Guangdong Province 2019A1515011784Opening Project of the Key Laboratory of Urban Agriculture in South China, Ministry of Agriculture and Rural Affairs No. 011
6 · The paper itself

Abstract

key messageThe pepper restorer-of-fertility (CaRf) gene was fine mapped based on conjoint analysis of recombinants and collinearity between the two pepper reference genomes. Capana06g003028, encoding an Rf-like PPR protein, was proposed as the strongest candidate for pepper CaRf based on sequence comparison and expression analysis. The cytoplasmic male sterility (CMS)/restorer-of-fertility (Rf) system not only provides an excellent model to dissect genetic interactions between the mitochondria and nucleus but also plays a vital role in high-efficiency hybrid seed production in crops including pepper (Capsicum spp.). Although two important CMS candidate genes, orf507 and Ψatp6-2, have previously been suggested, the pepper Rf gene (CaRf) has not yet been isolated. In this study, a high-density genetic map comprising 7566 SNP markers in 1944 bins was first constructed with the array genotyping results from 317 F

Indexed as

Amino Acid SequenceCapsicumChromosome MappingCytoplasmGene Expression Regulation, PlantGenes, PlantGenetic LinkageGenetic MarkersPhenotypePlant InfertilityPolymorphism, Single NucleotideGenetic Markers

Identifiers

PMID31863157
OpenAlexW2994987588

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.