Evidence map›Paper›PMID 31863032›Full record

ArticleHeredity2020

Endemic and panglobal genetic groups, and divergence of host-associated forms in worldwide collections of the wheat leaf rust fungus Puccinia triticina as determined by genotyping by sequencing.

J A Kolmer, A Herman, M E Ordoñez, S German, A Morgounov, Z Pretorius, B Visser, Y Anikster, M Acevedo

Open access · bronzeAbstract read
In one paragraph

Article in Heredity, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
4.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 35 citations in OpenAlex.

  1. Article
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  6. The Migration, Diversity, and Evolution ofPlants (Basel, Switzerland) · 2024
    Article
  7. Article
  8. Genetic Variation ofJournal of fungi (Basel, Switzerland) · 2023
    Article
  9. Article
  10. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 8 institutions in 6 countries.

J A KolmerUnited States Department of Agriculture - Agricultural Research Service, Cereal Disease Laboratory, St. Paul, Minnesota, 55108, USA. jim.kolmer@ars.usda.gov.ORCID http://orcid.org/0000-0003-1790-202X
A HermanMinnesota Supercomputing Institute, University of Minnesota, Minneapolis, 55455, USA.
M E OrdoñezPontificia Universidad Católica del Ecuador, Quito, Ecuador.
S GermanInstituto Nacional de Investigación Agropecuaria (INIA). Estación Experimental INIA La Estanzuela., Ruta 50 km 11, 39173, Colonia, Uruguay.
A MorgounovInternational Wheat and Maize Improvement Center, PK 39 Emek, 06511, Ankara, Turkey.
Z PretoriusUniversity of the Free State, Faculty of Natural and Agricultural Sciences, Bloemfontein, South Africa.ORCID http://orcid.org/0000-0002-1053-188X
B VisserUniversity of the Free State, Faculty of Natural and Agricultural Sciences, Bloemfontein, South Africa.
Y AniksterInstitute for Cereal Crop Improvement, Tel Aviv University, Tel Aviv, 69978, Israel.
M AcevedoInternational Programs-CALS, Cornell University, Ithaca, New York, 14853, USA.
University of the Free State · ZAAgricultural Research Service · USCornell University · USInstituto Nacional de Investigación Agropecuaria · UYIpek University · TRPontificia Universidad Católica del Ecuador · ECTel Aviv University · ILUniversity of Minnesota · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The wheat leaf rust fungus, Puccinia triticina, is found in the major wheat growing regions of the world and is a leading cause of yield loss in wheat. Populations of P. triticina are highly variable for virulence to resistance genes in wheat and adapt quickly to resistance genes in wheat cultivars. The objectives of this study were to determine the genetic relatedness of worldwide collections of P. triticina using restriction site associated genotyping by sequencing. A total of 558 isolates of P. triticina from wheat producing regions in North America, South America, Europe, the Middle East, Ethiopia, Russia, Pakistan, Central Asia, China, New Zealand, and South Africa were characterized at 6745 single nucleotide loci. Isolates were also tested for virulence to 20 near-isogenic lines that differ for leaf rust resistance genes. Populations that were geographically proximal were also more closely related for genotypes. In addition, groups of isolates within regions that varied for genotype were similar to groups from other regions, which indicated past and recent migration across regions. Isolates from tetraploid durum wheat in five different regions were highly related with distinct genotypes compared to isolates from hexaploid common wheat. Based on a molecular clock, isolates from durum wheat found only in Ethiopia were the first to diverge from a common ancestor form of P. triticina that is found on the wild wheat relative Aegilops speltoides, followed by the divergence of isolates found worldwide that are virulent to durum wheat, and then by isolates found on common wheat.

Indexed as

Plant DiseasesPucciniaAsiaChinaEthiopiaEuropeGenotypeMiddle EastNew ZealandNorth AmericaPakistanRussiaSouth AfricaSouth America

Identifiers

PMID31863032
PMCPMC7028995
OpenAlexW2996041456

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.