Evidence map›Paper›PMID 31862901›Full record

ArticleScientific reports2019

Transcriptional plasticity buffers genetic variation in zinc homeostasis.

Alice Pita-Barbosa, Felipe K Ricachenevsky, Michael Wilson, Tania Dottorini, David E Salt

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
16.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 73 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Genomic characterization of ZIP genes in pigeonpea (Physiology and molecular biology of plants : an international journal of functional plant biology · 2021
    Article
  6. Ionomic Approaches for Discovery of Novel Stress-Resilient Genes in Plants.International journal of molecular sciences · 2021
    Review
  7. Review
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Alice Pita-BarbosaCenter for Coastal, Limnology and Marine Studies, Federal University of Rio Grande do Sul, Litoral Norte Campus, Imbé, RS, 95625-000, Brazil.
Felipe K RicachenevskyBiology Department, Center of Natural and Exact Sciences, Federal University of Santa Maria, Santa Maria, Brazil.
Michael WilsonFuture Food Beacon of Excellence and the School of Biosciences, University of Nottingham, Nottingham, LE12 5RD, UK.
Tania DottoriniSchool of Veterinary Medicine and Science, University of Nottingham, Nottingham, LE12 5RD, UK.
David E SaltFuture Food Beacon of Excellence and the School of Biosciences, University of Nottingham, Nottingham, LE12 5RD, UK. david.salt@nottingham.ac.uk.
University of Nottingham · GBUniversidade Federal de Santa Maria · BRUniversidade Federal do Rio Grande do Sul · BR

Funding

RCUK | Biotechnology and Biological Sciences Research Council (BBSRC) BB/L000113
6 · The paper itself

Abstract

In roots of Arabidopsis thaliana, Zn can be either loaded into the xylem for translocation to the shoot or stored in vacuoles. Vacuolar storage is achieved through the action of the Zn/Cd transporter HMA3 (Heavy Metal Atpase 3). The Col-0 accession has an HMA3 loss-of-function allele resulting in high shoot Cd, when compared to accession CSHL-5 which has a functional allele and low shoot Cd. Interestingly, both Col-0 and CSHL-5 have similar shoot Zn concentrations. We hypothesize that plants sense changes in cytosolic Zn that are due to variation in HMA3 function, and respond by altering expression of genes related to Zn uptake, transport and compartmentalisation, in order to maintain Zn homeostasis. The expression level of genes known to be involved in Zn homeostasis were quantified in both wild-type Col-0 and Col-0::HMA3

Indexed as

ArabidopsisArabidopsis ProteinsGene Expression Regulation, PlantGenetic VariationZincArabidopsis ProteinsZinc

Identifiers

PMID31862901
PMCPMC6925235
OpenAlexW2996498311

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.