Evidence map›Paper›PMID 31862714›Full record

ArticleApplied and environmental microbiology2020

Performance and Accuracy of Four Open-Source Tools for

Laura Uelze, Maria Borowiak, Carlus Deneke, István Szabó, Jennie Fischer, Simon H Tausch, Burkhard Malorny

Open access · hybridAbstract readComparative Study
In one paragraph

Article in Applied and environmental microbiology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
7.8field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 48 citations in OpenAlex.

  1. Article
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  3. Genomic Epidemiology of FoodborneAntibiotics (Basel, Switzerland) · 2026
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  4. Microbiology spectrum · 2026
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  5. Fritz Kauffmann: innovator in microbial classification.APMIS : acta pathologica, microbiologica, et immunologica Scandinavica · 2025
    Review
  6. Population structure analysis ofFrontiers in microbiology · 2025
    Article
  7. Article
  8. Phylogeny and divergence of the 100 most commonFrontiers in microbiology · 2025
    Article
  9. Genomic Surveillance ofAntibiotics (Basel, Switzerland) · 2023
    Article
  10. Article
  11. AreFoods (Basel, Switzerland) · 2022
    Article
  12. EnteroBase: hierarchical clustering of 100 000s of bacterial genomes into species/subspecies and populations.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2022
    Article
  13. Review
  14. Retrieving Good-QualityBioinformatics and biology insights · 2022
    Article
  15. Analysis of Antimicrobial Resistance in Non-typhoidalFrontiers in veterinary science · 2022
    Article
  16. Genomic Characterization ofFrontiers in microbiology · 2022
    Article
  17. Article
  18. Article
  19. ECTyper:Microbial genomics · 2021
    Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Laura UelzeGerman Federal Institute for Risk Assessment (BfR), Berlin, Germany.ORCID 0000-0002-6020-3841
Maria BorowiakGerman Federal Institute for Risk Assessment (BfR), Berlin, Germany.
Carlus DenekeGerman Federal Institute for Risk Assessment (BfR), Berlin, Germany.
István SzabóGerman Federal Institute for Risk Assessment (BfR), Berlin, Germany.
Jennie FischerGerman Federal Institute for Risk Assessment (BfR), Berlin, Germany.
Simon H TauschGerman Federal Institute for Risk Assessment (BfR), Berlin, Germany.
Burkhard MalornyGerman Federal Institute for Risk Assessment (BfR), Berlin, Germany burkhard.malorny@bfr.bund.de.
Federal Institute for Risk Assessment · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We compared the performance of four open-source

Indexed as

Computer SimulationGenome, BacterialGermanyHigh-Throughput Nucleotide SequencingRetrospective StudiesSalmonellaSerotypingWhole Genome SequencingO antigenSalmonellaserotypingserovar predictionwhole-genome sequencing

Identifiers

PMID31862714
PMCPMC7028957
OpenAlexW2996646588

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.