Evidence map›Paper›PMID 31862297›Full record

ArticleStructure (London, England : 1993)2020

The Structural Basis for Low Conductance in the Membrane Protein VDAC upon β-NADH Binding and Voltage Gating.

Raphael Böhm, Giuseppe Federico Amodeo, Sruthi Murlidaran, Shashank Chavali, Gerhard Wagner, Mathias Winterhalter, Grace Brannigan, Sebastian Hiller

Open access · bronzeAbstract read
In one paragraph

Article in Structure (London, England : 1993), 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
1.5field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 41 citations in OpenAlex.

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  15. Two conformations of the Tom20 preprotein receptor in the TOM holo complex.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  16. Review
  17. Mitochondrial DNA in cell death and inflammation.Biochemical Society transactions · 2023
    Review
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 3 countries.

Raphael BöhmBiozentrum, University of Basel, Basel 4056, Switzerland.
Giuseppe Federico AmodeoLife Science and Health, Jacobs University Bremen, Bremen 28759, Germany.
Sruthi MurlidaranCenter for Computational Biology, Rutgers University, Camden, NJ 08102, USA.
Shashank ChavaliDepartment of Biology, Rutgers University, Camden, NJ 08201, USA.
Gerhard WagnerDepartment of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA.
Mathias WinterhalterLife Science and Health, Jacobs University Bremen, Bremen 28759, Germany.
Grace BranniganCenter for Computational Biology, Rutgers University, Camden, NJ 08102, USA; Department of Physics, Center for Computational and Integrative Biology, Rutgers University, Camden, NJ 08201, USA.
Sebastian HillerBiozentrum, University of Basel, Basel 4056, Switzerland. Electronic address: sebastian.hiller@unibas.ch.
Rutgers, The State University of New Jersey · USConstructor University · DEUniversity of Basel · CHHarvard University · US

Funding

X-ray and Neutron Interferometry Studies of Anesthetic Interactions with VoltageP01GM055876 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI LOLL, PATRICK J · 1997 to 2017
$22.4M
OverallP41EB002026 · NIBIB · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI GRIFFIN, ROBERT GUY · 2003 to 2018
$17.9M
Acquisition of a 900 MHz NMR SpectrometerP41GM066360 · NIGMS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI GRIFFIN, ROBERT GUY · 2002 to 2006
$6.7M
CONTROL AND ACTIVATION OF THE TUMOR NECROSIS FACTOR RECEPTORSR01AI150709 · NIAID · HARVARD MEDICAL SCHOOL · PI WAGNER, GERHARD, WU, HAO · 2020 to 2024
$4.0M
TR&D 4 -- Advanced Magic Angle Spinning NMR methodsP41GM132079 · NIGMS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI GRIFFIN, ROBERT GUY · 2019 to 2021
$3.6M
Structure and interactions of the Voltage-Dependent Anion Channel(VDAC)R01GM075879 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI WAGNER, GERHARD · 2005 to 2013
$2.3M
Next Generation Solution NMR Techniques for GPCR Structure, Dynamics and FunctionR01GM129026 · NIGMS · HARVARD MEDICAL SCHOOL · PI WAGNER, GERHARD · 2018 to 2021
$2.0M
New RF Electronics Console and Probes for 900 Mhz NMR SpectrometerS10OD023513 · OD · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI GRIFFIN, ROBERT GUY · 2018 to 2018
$1.0M
NIAID NIH HHS R01 AI150709NIBIB NIH HHS P41 EB002026NIGMS NIH HHS P01 GM055876NIGMS NIH HHS P41 GM066360NIGMS NIH HHS P41 GM132079NIGMS NIH HHS R01 GM075879NIGMS NIH HHS R01 GM129026NIH HHS S10 OD023513
6 · The paper itself

Abstract

The voltage-dependent anion channel (VDAC) forms the primary diffusion pore of the outer mitochondrial membrane. In its apo form, VDAC adopts an open conformation with high conductance. States of lower conductance can be induced by ligand binding or the application of voltage. Here, we clarify at the atomic level how β-NADH binding leads to a low-conductance state and characterize the role of the VDAC N-terminal helix in voltage gating. A high-resolution NMR structure of human VDAC-1 with bound NADH, combined with molecular dynamics simulation show that β-NADH binding reduces the pore conductance sterically without triggering a structural change. Electrophysiology recordings of crosslinked protein variants and NMR relaxation experiments probing different time scales show that increased helix dynamics is present in the open state and that motions of the N-terminal helices are involved in the VDAC voltage gating mechanism.

Indexed as

HumansMitochondriaMitochondrial MembranesModels, MolecularMolecular Dynamics SimulationNADProtein BindingProtein Structure, SecondaryVoltage-Dependent Anion Channel 1NADVDAC1 protein, humanVoltage-Dependent Anion Channel 1crosslinkingelectrophysiologymembrane proteinmolecular dynamicsNADHNMR spectroscopyprotein dynamicsVDAC gating

Identifiers

PMID31862297
PMCPMC8353649
OpenAlexW2993300549

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.