Evidence map›Paper›PMID 31860681›Full record

ArticlePloS one2019

Application of pharmacogenomics and bioinformatics to exemplify the utility of human ex vivo organoculture models in the field of precision medicine.

Karen Cowan, Graeme Macluskie, Michael Finch, Colin N A Palmer, Jane Hair, Max Bylesjo, Sarah Lynagh, Pamela Brankin, Marian McNeil, Carolyn Low and 5 more

Abstract read
In one paragraph

Article in PloS one, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Karen CowanREPROCELL Europe Ltd, Thomson Pavilion, Glasgow, Scotland, United Kingdom.ORCID 0000-0002-4788-1699
Graeme MacluskieREPROCELL Europe Ltd, Thomson Pavilion, Glasgow, Scotland, United Kingdom.
Michael FinchREPROCELL Europe Ltd, Thomson Pavilion, Glasgow, Scotland, United Kingdom.
Colin N A PalmerSchool of Medicine, University of Dundee, Ninewells Hospital and Medical School, Dundee, Scotland, United Kingdom.ORCID 0000-0002-6415-6560
Jane HairNHS Greater Glasgow & Clyde, Queen Elizabeth University Hospital, Glasgow, Scotland, United Kingdom.
Max BylesjoFios Genomics Ltd, Nine Edinburgh Bioquarter, Edinburgh, Scotland, United Kingdom.
Sarah LynaghFios Genomics Ltd, Nine Edinburgh Bioquarter, Edinburgh, Scotland, United Kingdom.
Pamela BrankinAridhia Informatics Ltd Teaching and Learning Building, Queen Elizabeth University Hospital, Glasgow, Scotland, United Kingdom.
Marian McNeilStratified Medicines Scotland Innovation Centre, Teaching and Learning Building, Queen Elizabeth University Hospital, Glasgow, Scotland, United Kingdom.
Carolyn LowStratified Medicines Scotland Innovation Centre, Teaching and Learning Building, Queen Elizabeth University Hospital, Glasgow, Scotland, United Kingdom.
David MallinsonSistemic Ltd, West of Scotland Science Park, Glasgow, Scotland, United Kingdom.
Elaine M GourlaySistemic Ltd, West of Scotland Science Park, Glasgow, Scotland, United Kingdom.
Hannah ChildStratified Medicines Scotland Innovation Centre, Teaching and Learning Building, Queen Elizabeth University Hospital, Glasgow, Scotland, United Kingdom.
Linda CheyneStratified Medicines Scotland Innovation Centre, Teaching and Learning Building, Queen Elizabeth University Hospital, Glasgow, Scotland, United Kingdom.
David C BuntonREPROCELL Europe Ltd, Thomson Pavilion, Glasgow, Scotland, United Kingdom.ORCID 0000-0001-9262-1696

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Here we describe a collaboration between industry, the National Health Service (NHS) and academia that sought to demonstrate how early understanding of both pharmacology and genomics can improve strategies for the development of precision medicines. Diseased tissue ethically acquired from patients suffering from chronic obstructive pulmonary disease (COPD), was used to investigate inter-patient variability in drug efficacy using ex vivo organocultures of fresh lung tissue as the test system. The reduction in inflammatory cytokines in the presence of various test drugs was used as the measure of drug efficacy and the individual patient responses were then matched against genotype and microRNA profiles in an attempt to identify unique predictors of drug responsiveness. Our findings suggest that genetic variation in CYP2E1 and SMAD3 genes may partly explain the observed variation in drug response.

Indexed as

Pharmacogenomic VariantsAminopyridinesBenzamidesCyclopropanesExome SequencingFluticasoneFormoterol FumarateGenomicsHumansLungMicroRNAsModels, BiologicalOrgan Culture TechniquesPrecision MedicinePulmonary Disease, Chronic ObstructiveState MedicineAminopyridinesBenzamidesCyclopropanesFluticasoneFormoterol FumarateMicroRNAsRoflumilast

Identifiers

PMID31860681
PMCPMC6924641

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.