Evidence map›Paper›PMID 31860080›Full record

ArticleGenome biology and evolution2020

Whole Genome Sequencing and Assembly of the Asian Honey Bee Apis dorsata.

Sara Oppenheim, Xiaolong Cao, Olav Rueppel, Sasiprapa Krongdang, Patcharin Phokasem, Rob DeSalle, Sara Goodwin, Jinchuan Xing, Panuwan Chantawannakul, Jeffrey A Rosenfeld

Abstract read
In one paragraph

Article in Genome biology and evolution, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed.

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  12. High-throughput proteomics: a methodological mini-review.Laboratory investigation; a journal of technical methods and pathology · 2022
    Review
  13. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Sara OppenheimSackler Institute for Comparative Genomics, American Museum of Natural History.
Xiaolong CaoDepartment of Genetics, Human Genetic Institute of New Jersey, Rutgers, The State University of New Jersey.
Olav RueppelBiology Department, University of North Carolina at Greensboro.
Sasiprapa KrongdangDepartment of Biology & Environmental Science Research Center (ESRC), Faculty of Science, Chiang Mai University, Thailand.
Patcharin PhokasemDepartment of Biology & Environmental Science Research Center (ESRC), Faculty of Science, Chiang Mai University, Thailand.
Rob DeSalleSackler Institute for Comparative Genomics, American Museum of Natural History.
Sara GoodwinCold Spring Harbor Laboratory.
Jinchuan XingDepartment of Genetics, Human Genetic Institute of New Jersey, Rutgers, The State University of New Jersey.
Panuwan ChantawannakulDepartment of Biology & Environmental Science Research Center (ESRC), Faculty of Science, Chiang Mai University, Thailand.
Jeffrey A RosenfeldSackler Institute for Comparative Genomics, American Museum of Natural History.

Funding

TRANSCRIPTIONAL PROFILINGP30CA072720 · NCI · UNIV OF MED/DENT NJ-R W JOHNSON MED SCH · PI Tracie Saunders · 1997 to 2026
$94.5M
Predictive Modeling & Optimal Control Framework for Model-Based Epidemic Response in DelawareP20GM103446 · NIGMS · UNIVERSITY OF DELAWARE · PI Shawn W Polson · 2012 to 2026
$67.2M
The Development and Optimization of Long-Read Sequencing Applications to Cancer Genomics in a Core SettingR50CA243890 · NCI · COLD SPRING HARBOR LABORATORY · PI GOODWIN, SARA · 2019 to 2025
$920k
NCI NIH HHS P30 CA072720NCI NIH HHS R50 CA243890NIGMS NIH HHS P20 GM103446
6 · The paper itself

Abstract

The Asian honey bee (Apis dorsata) is distinct from its more widely distributed cousin Apis mellifera by a few key characteristics. Most prominently, A. dorsata, nest in the open by forming a colony clustered around the honeycomb, whereas A. mellifera nest in concealed cavities. Additionally, the worker and reproductive castes are all of the same size in A. dorsata. In order to investigate these differences, we performed whole genome sequencing of A. dorsata using a hybrid Oxford Nanopore and Illumina approach. The 223 Mb genome has an N50 of 35 kb with the largest scaffold of 302 kb. We have found that there are many genes in the dorsata genome that are distinct from other hymenoptera and also large amounts of transposable elements, and we suggest some candidate genes for A. dorsata's exceptional level of defensive aggression.

Indexed as

Genome, InsectAnimalsBeesGenes, InsectReceptor, Serotonin, 5-HT2ASpecies SpecificityWhole Genome SequencingReceptor, Serotonin, 5-HT2AApisbeeshoney

Identifiers

PMID31860080
PMCPMC6953811

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.