Evidence map›Paper›PMID 31858753›Full record

ArticleJournal of Korean medical science2019

Amplification of Stem Genes: New Potential Metastatic Makers in Patients with an Early Form of Breast Cancer.

Matvey M Tsyganov, Marina K Ibragimova, Alina M Pevzner, Artem V Doroshenko, Elena M Slonimskaya, Nikolai V Litviakov

Open access · goldAbstract read
In one paragraph

Article in Journal of Korean medical science, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.3field-weighted citation impact, top 43% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Matvey M TsyganovDepartment of Experimental Oncology, Cancer Research Institute, Tomsk National Research Medical Center, Russian Academy of Sciences Tomsk, Russian Federation. TsyganovMM@yandex.ru.ORCID https://orcid.org/0000-0001-7419-4512
Marina K IbragimovaDepartment of Experimental Oncology, Cancer Research Institute, Tomsk National Research Medical Center, Russian Academy of Sciences Tomsk, Russian Federation.ORCID https://orcid.org/0000-0001-8815-2786
Alina M PevznerDepartment of Experimental Oncology, Cancer Research Institute, Tomsk National Research Medical Center, Russian Academy of Sciences Tomsk, Russian Federation.ORCID https://orcid.org/0000-0002-9657-9058
Artem V DoroshenkoDepartment of General Oncology, Cancer Research Institute, Tomsk National Research Medical Center, Russian Academy of Sciences, Tomsk, Russian Federation.ORCID https://orcid.org/0000-0001-8846-9636
Elena M SlonimskayaDepartment of General Oncology, Cancer Research Institute, Tomsk National Research Medical Center, Russian Academy of Sciences, Tomsk, Russian Federation.ORCID https://orcid.org/0000-0003-4382-5697
Nikolai V LitviakovDepartment of Experimental Oncology, Cancer Research Institute, Tomsk National Research Medical Center, Russian Academy of Sciences Tomsk, Russian Federation.ORCID https://orcid.org/0000-0002-0714-8927
Tomsk National Research Medical Center · RURussian Academy of Sciences · RU

Funding

Russian Science Foundation 17-15-012-03
6 · The paper itself

Abstract

backgroundAccording to our previous studies, the presence of amplifications of stem genes can lead to their ectopic expression and this is associated with an increased activity of tumor stem cells in these patients. This leads to a high aggressiveness of the tumor and the development of metastatic disease. The aim was to evaluate the prognostic significance of the presence of amplifications of stem genes and their expression in patients with early breast cancer (BC).

methodsThe study included 28 patients with T₁NxM₀ BC. We used surgical specimens, including formalin-fixed paraffin-embedded archive materials, for 8 patients. A microarray analysis was performed on high-density DNA chips from CytoScanHDArray to assess the status of copy number aberration (CNA) of stem genes locus. Gene expression was assessed using RT-qPCR.

resultsCNA analysis of the studied tumors of patients without chemotherapy showed that 17/18 patients without metastases did not have two or more amplifications of chromosomal regions. Ten patients had visceral metastases. In 9/10 of these patients in the primary tumor there were two or more amplifications of the stem genes locus. Two or more amplifications of stem genes locus were found in 12 patients with stage I. Hematogenous metastases did not develop in all patients. Comparison of metastasis-free survival rates in groups of patients with 1 or without amplifications and with two or more amplifications showed statistically significant differences (

conclusionOur studies have shown that the presence of clones with two or more amplifications of stem gene in patients with BC T₁NxM₀ has a significant prognostic value and determines an unfavorable prognosis for distant metastasis.

Indexed as

AdultBiomarkers, TumorBreast NeoplasmsFemaleGene Expression Regulation, NeoplasticHumansKaplan-Meier EstimateKruppel-Like Factor 4Kruppel-Like Transcription FactorsMiddle AgedNeoplasm MetastasisNeoplasm StagingOctamer Transcription Factor-3Oligonucleotide Array Sequence AnalysisPrognosisSOXE Transcription FactorsBiomarkers, TumorKruppel-Like Factor 4Kruppel-Like Transcription FactorsOctamer Transcription Factor-3POU5F1 protein, humanSOX8 protein, humanSOXE Transcription FactorsAmplificationEarly Breast CancerPrognosisStem Genes

Identifiers

PMID31858753
PMCPMC6926101
OpenAlexW2990414179

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.