Evidence map›Paper›PMID 31858318›Full record

ArticleGenetica2020

Molecular evidence for three genetic species of Dipteryx in the Peruvian Amazon.

Carmen Garcia-Davila, David Aldana Gomero, Jean-François Renno, Rossana Diaz Soria, Gabriel Hidalgo Pizango, Gerardo Flores Llampazo, Diana Castro-Ruiz, Eduardo Mejia de Loayza, Carlos Angulo Chavez, Malte Mader and 5 more

Abstract read
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In one paragraph

Article in Genetica, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Carmen Garcia-DavilaInstituto de Investigaciones de la Amazonía Peruana, Laboratorio de Biología y Genética Molecular (LBGM), Carretera Iquitos-Nauta km 4.5, Iquitos, Peru. cdavila19@yahoo.com.ORCID http://orcid.org/0000-0003-4125-5563
David Aldana GomeroUniversidad Nacional Agraria La Molina, Facultad de Ciencias Forestales, Av. La Molina s.n, Lima, Peru.
Jean-François RennoIRD Institut de Recherche pour le Développement-IRD, Montpellier, France.
Rossana Diaz SoriaInstituto de Investigaciones de la Amazonía Peruana, Laboratorio de Biología y Genética Molecular (LBGM), Carretera Iquitos-Nauta km 4.5, Iquitos, Peru.
Gabriel Hidalgo PizangoInstituto de Investigaciones de la Amazonía Peruana, Programa de Investigación en Manejo de Bosques y Servicios Ambientales (PROBOSQUES), Av. Abelardo Quiñones km 2.5, Iquitos, Peru.
Gerardo Flores LlampazoInstituto de Investigaciones de la Amazonía Peruana, Programa de Investigación en Manejo de Bosques y Servicios Ambientales (PROBOSQUES), Av. Abelardo Quiñones km 2.5, Iquitos, Peru.
Diana Castro-RuizInstituto de Investigaciones de la Amazonía Peruana, Laboratorio de Biología y Genética Molecular (LBGM), Carretera Iquitos-Nauta km 4.5, Iquitos, Peru.
Eduardo Mejia de LoayzaInstituto de Investigaciones de la Amazonía Peruana, Laboratorio de Biología y Genética Molecular (LBGM), Carretera Iquitos-Nauta km 4.5, Iquitos, Peru.
Carlos Angulo ChavezInstituto de Investigaciones de la Amazonía Peruana, Laboratorio de Biología y Genética Molecular (LBGM), Carretera Iquitos-Nauta km 4.5, Iquitos, Peru.
Malte MaderJohann Heinrich von Thünen-Institut, Institut für Forstgenetik, Sieker Landstrasse 2, 22927, Grosshansdorf, Germany.
Niklas TysklindINRA, UMR0745 EcoFoG, AgroParisTech, Cirad, CNRS, Université des Antilles, Université de Guyane, Campus Agronomique, Avenue de France, 97387, Kourou Cedex, France.
Kathelyn Paredes-VillanuevaCarrera de Ingeniería Foresta, Laboratorio de Dendrocronología, Facultad de Ciencias Agrícolas, Universidad Autónoma Gabriel René Moreno, Km 9 carretera al Norte, El Vallecito, Santa Cruz, Bolivia.
Dennis Del Castillo TorresInstituto de Investigaciones de la Amazonía Peruana, Programa de Investigación en Manejo de Bosques y Servicios Ambientales (PROBOSQUES), Av. Abelardo Quiñones km 2.5, Iquitos, Peru.
Bernd DegenJohann Heinrich von Thünen-Institut, Institut für Forstgenetik, Sieker Landstrasse 2, 22927, Grosshansdorf, Germany.
Eurídice N Honorio CoronadoInstituto de Investigaciones de la Amazonía Peruana, Programa de Investigación en Manejo de Bosques y Servicios Ambientales (PROBOSQUES), Av. Abelardo Quiñones km 2.5, Iquitos, Peru.

Funding

the German Federal Ministry of Food and Agriculture BMELthe German Federal Ministry of Food and Agriculture grant 28I-001-01the German Federal Ministry of Food and Agriculture LargeScale-projectthe Programa Nacional de Innovacion para la Competitividad y productividad 381-PNICP-PIAP-2014
6 · The paper itself

Abstract

There is a high international demand for timber from the genus Dipteryx, or "shihuahuaco" as it is known in Peru. Developing tools that allow the identification and discrimination of Dipteryx species is therefore important for supporting management of natural populations and to underpin legal trade of its timber. The objective of this study was the molecular characterization of Dipteryx species in the Peruvian Amazonia. Two plastid regions (cpDNA: trnH-psbA and matK) were sequenced and 11 microsatellite markers (nDNA) were genotyped for 32 individuals identified as Dipteryx charapilla, D. micrantha morphotype 1 and D. micrantha morphotype 2. Using the concatenated sequences of the plastid genes, we identified ten haplotypes that were not shared between the species or between the D. micrantha morphotypes. Haplotypic diversity was greater in D. micrantha morphotype 2 and D. charapilla than in D. micrantha morphotype 1, which presented only one haplotype with a wide distribution in Peru. The microsatellites allowed the discrimination of the same three clades and identified diagnostic alleles for each clade. These results allowed us to demonstrate that the two morphotypes of D. micrantha are different at both the plastid and nuclear markers, which supports the existence of three genetically distinct species in Peru. This study provides information for the genetic discrimination of Dipteryx species and emphasises the importance of conserving the genetic variability of this genus in the Peruvian Amazonia.

Indexed as

AllelesDipteryxDNA, PlantGenetic VariationGenotypeHaplotypesMicrosatellite RepeatsPeruPhylogenyPlastidsRiversSequence Analysis, DNASpecies SpecificityDNA, PlantDipteryx charapillaD. micranthaGenetic diversityMicrosatellitesSequencingShihuahuaco

Identifiers

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.