Evidence map›Paper›PMID 31857576›Full record

ArticleNature communications2019

Edematous severe acute malnutrition is characterized by hypomethylation of DNA.

Katharina V Schulze, Shanker Swaminathan, Sharon Howell, Aarti Jajoo, Natasha C Lie, Orgen Brown, Roa Sadat, Nancy Hall, Liang Zhao, Kwesi Marshall and 10 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed, 1 pooled it
2.8field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 1 synthesis or guideline pooled it, 44 citations in OpenAlex.

  1. Pooled it
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  10. Non-coding 886 (Epigenetics · 2024
    Review
  11. ArXiv · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 5 institutions in 4 countries.

Katharina V SchulzeDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.ORCID http://orcid.org/0000-0001-8268-5565
Shanker SwaminathanDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.
Sharon HowellTropical Metabolism Research Unit, Caribbean Institute for Health Research, University of the West Indies, Mona, Jamaica.
Aarti JajooDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.
Natasha C LieUSDA/ARS/Children's Nutrition Research Center, Baylor College of Medicine, Houston, TX, USA.
Orgen BrownTropical Metabolism Research Unit, Caribbean Institute for Health Research, University of the West Indies, Mona, Jamaica.
Roa SadatUSDA/ARS/Children's Nutrition Research Center, Baylor College of Medicine, Houston, TX, USA.
Nancy HallUSDA/ARS/Children's Nutrition Research Center, Baylor College of Medicine, Houston, TX, USA.
Liang ZhaoPrecision Medicine Research Center, Taihe Hospital, Shiyan City, China.
Kwesi MarshallTropical Metabolism Research Unit, Caribbean Institute for Health Research, University of the West Indies, Mona, Jamaica.
Thaddaeus MayUSDA/ARS/Children's Nutrition Research Center, Baylor College of Medicine, Houston, TX, USA.
Marvin E ReidTropical Metabolism Research Unit, Caribbean Institute for Health Research, University of the West Indies, Mona, Jamaica.
Carolyn Taylor-BryanTropical Metabolism Research Unit, Caribbean Institute for Health Research, University of the West Indies, Mona, Jamaica.
Xueqing WangDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.
John W BelmontDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.ORCID http://orcid.org/0000-0001-7409-3578
Yongtao GuanDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.
Mark J ManaryDepartments of Paediatrics and Child Health and Community Health, University of Malawi, Blantyre, Malawi.
Indi TrehanDepartments of Paediatrics and Child Health and Community Health, University of Malawi, Blantyre, Malawi.ORCID http://orcid.org/0000-0002-3364-6858
Colin A McKenzieTropical Metabolism Research Unit, Caribbean Institute for Health Research, University of the West Indies, Mona, Jamaica.
Neil A HanchardDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA. hanchard@bcm.edu.ORCID http://orcid.org/0000-0003-1925-2665
Baylor College of Medicine · USUniversity of the West Indies · JMChildren's Nutrition Research Center at Baylor College of Medicine · USUniversity of Malawi · MWTaihe Hospital · CN

Funding

TRAINING PROGRAM IN CELL AND MOLECULAR BIOLOGYT32GM008231 · NIGMS · BAYLOR COLLEGE OF MEDICINE · PI NELSON, DAVID LOREN · 1990 to 2019
$7.2M
PROGRAM IN HUMAN MOLECULAR GENETICST32GM008307 · NIGMS · BAYLOR COLLEGE OF MEDICINE · PI SHAULSKY, GAD · 1990 to 2020
$6.6M
NIGMS NIH HHS T32 GM008231NIGMS NIH HHS T32 GM008307
6 · The paper itself

Abstract

Edematous severe acute childhood malnutrition (edematous SAM or ESAM), which includes kwashiorkor, presents with more overt multi-organ dysfunction than non-edematous SAM (NESAM). Reduced concentrations and methyl-flux of methionine in 1-carbon metabolism have been reported in acute, but not recovered, ESAM, suggesting downstream DNA methylation changes could be relevant to differences in SAM pathogenesis. Here, we assess genome-wide DNA methylation in buccal cells of 309 SAM children using the 450 K microarray. Relative to NESAM, ESAM is characterized by multiple significantly hypomethylated loci, which is not observed among SAM-recovered adults. Gene expression and methylation show both positive and negative correlation, suggesting a complex transcriptional response to SAM. Hypomethylated loci link to disorders of nutrition and metabolism, including fatty liver and diabetes, and appear to be influenced by genetic variation. Our epigenetic findings provide a potential molecular link to reported aberrant 1-carbon metabolism in ESAM and support consideration of methyl-group supplementation in ESAM.

Indexed as

DNA MethylationAdolescentAdultCase-Control StudiesChild, PreschoolCpG IslandsEpigenomeEpigenomicsFemaleGene Expression ProfilingHumansInfantJamaicaMalawiMaleMouth Mucosa

Identifiers

PMID31857576
PMCPMC6923441
OpenAlexW2996292212

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.