Evidence map›Paper›PMID 31857374›Full record

ArticleThe Journal of biological chemistry2020

NIMA-related kinase 9-mediated phosphorylation of the microtubule-associated LC3B protein at Thr-50 suppresses selective autophagy of p62/sequestosome 1.

Birendra Kumar Shrestha, Mads Skytte Rasmussen, Yakubu Princely Abudu, Jack-Ansgar Bruun, Kenneth Bowitz Larsen, Endalkachew A Alemu, Eva Sjøttem, Trond Lamark, Terje Johansen

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
2.7field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
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  13. In Mitosis You Are Not: The NIMA Family of Kinases inInternational journal of molecular sciences · 2022
    Review
  14. Review
  15. Review
  16. Review
  17. Article
  18. Beyond Autophagy: The Expanding Roles of ATG8 Proteins.Trends in biochemical sciences · 2021
    Review
  19. Autophagy and Ciliogenesis.JMA journal · 2021
    Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Birendra Kumar ShresthaMolecular Cancer Research Group, Department of Medical Biology, Faculty of Health Sciences, UiT-The Arctic University of Norway, 9037 Tromsø, Norway.ORCID 0000-0002-8972-0308
Mads Skytte RasmussenMolecular Cancer Research Group, Department of Medical Biology, Faculty of Health Sciences, UiT-The Arctic University of Norway, 9037 Tromsø, Norway.
Yakubu Princely AbuduMolecular Cancer Research Group, Department of Medical Biology, Faculty of Health Sciences, UiT-The Arctic University of Norway, 9037 Tromsø, Norway.ORCID 0000-0002-8798-270X
Jack-Ansgar BruunMolecular Cancer Research Group, Department of Medical Biology, Faculty of Health Sciences, UiT-The Arctic University of Norway, 9037 Tromsø, Norway.
Kenneth Bowitz LarsenMolecular Cancer Research Group, Department of Medical Biology, Faculty of Health Sciences, UiT-The Arctic University of Norway, 9037 Tromsø, Norway.
Endalkachew A AlemuMolecular Cancer Research Group, Department of Medical Biology, Faculty of Health Sciences, UiT-The Arctic University of Norway, 9037 Tromsø, Norway.
Eva SjøttemMolecular Cancer Research Group, Department of Medical Biology, Faculty of Health Sciences, UiT-The Arctic University of Norway, 9037 Tromsø, Norway.ORCID 0000-0003-2668-1708
Trond LamarkMolecular Cancer Research Group, Department of Medical Biology, Faculty of Health Sciences, UiT-The Arctic University of Norway, 9037 Tromsø, Norway.
Terje JohansenMolecular Cancer Research Group, Department of Medical Biology, Faculty of Health Sciences, UiT-The Arctic University of Norway, 9037 Tromsø, Norway terje.johansen@uit.no.ORCID 0000-0003-1451-9578
UiT The Arctic University of Norway · NO

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Human ATG8 family proteins (ATG8s) are active in all steps of the macroautophagy pathway, and their lipidation is essential for autophagosome formation. Lipidated ATG8s anchored to the outer surface of the phagophore serve as scaffolds for binding of other core autophagy proteins and various effector proteins involved in trafficking or fusion events, whereas those at the inner surface are needed for assembly of selective autophagy substrates. Their scaffolding role depends on specific interactions between the LC3-interacting region (LIR) docking site (LDS) in ATG8s and LIR motifs in various interaction partners. LC3B is phosphorylated at Thr-50 within the LDS by serine/threonine kinase (STK) 3 and STK4. Here, we identified LIR motifs in STK3 and atypical protein kinase Cζ (PKCζ) and never in mitosis A (NIMA)-related kinase 9 (NEK9). All three kinases phosphorylated LC3B Thr-50

Indexed as

Apoptosis Regulatory ProteinsAutophagyAutophagy-Related Protein 8 FamilyChromatography, High Pressure LiquidGene Knockout TechniquesHEK293 CellsHeLa CellsHippo KinasesHumansIntracellular Signaling Peptides and ProteinsMicrotubule-Associated ProteinsMutationNIMA-Related KinasesPhosphorylationProtein Interaction Domains and MotifsProtein Kinase CApoptosis Regulatory ProteinsAutophagy-Related Protein 8 FamilyGABARAPL2 protein, humanGABARAP protein, humanHippo KinasesIntracellular Signaling Peptides and ProteinsMAP1LC3B protein, humanMicrotubule-Associated ProteinsNEK9 protein, humanNIMA-Related KinasesProtein Kinase CProtein Kinase C zetaProtein Serine-Threonine KinasesRNA, Small InterferingSequestosome-1 ProteinSerine-Threonine Kinase 3SQSTM1 protein, humanSTK3 protein, humanSTK4 protein, humanThreonineautophagyLC3BLDSLIRMST1 (mammalian sterile 20-like kinase 1)MST2 (mammalian sterile 20-like kinase 2)NIMA-related kinase 9 (NEK9)protein kinaseprotein–protein interactionserine/threonine kinase 3 (STK3)

Identifiers

PMID31857374
PMCPMC6996884
OpenAlexW2995762060

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.