Evidence map›Paper›PMID 31856884›Full record

ArticleOrphanet journal of rare diseases2019

Novel mutations in the 3-box motif of the BACK domain of KLHL7 associated with nonsyndromic autosomal dominant retinitis pigmentosa.

Jin Kyun Oh, Jose Ronaldo Lima de Carvalho, Young Joo Sun, Sara Ragi, Jing Yang, Sarah R Levi, Joseph Ryu, Alexander G Bassuk, Vinit B Mahajan, Stephen H Tsang

Open access · goldAbstract read
In one paragraph

Article in Orphanet journal of rare diseases, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.3field-weighted citation impact, top 42% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Review
  3. Altered contractility, CaAmerican journal of physiology. Heart and circulatory physiology · 2023
    Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 2 countries.

Jin Kyun OhDepartment of Ophthalmology, Columbia University Medical Center, New York, NY, USA.
Jose Ronaldo Lima de CarvalhoDepartment of Ophthalmology, Columbia University Medical Center, New York, NY, USA.
Young Joo SunOmics Laboratory, Byers Eye Institute, Stanford University, Palo Alto, CA, USA.
Sara RagiDepartment of Ophthalmology, Columbia University Medical Center, New York, NY, USA.
Jing YangOmics Laboratory, Byers Eye Institute, Stanford University, Palo Alto, CA, USA.
Sarah R LeviDepartment of Ophthalmology, Columbia University Medical Center, New York, NY, USA.
Joseph RyuDepartment of Ophthalmology, Columbia University Medical Center, New York, NY, USA.
Alexander G BassukDepartment of Pediatrics, University of Iowa, Iowa City, USA.
Vinit B MahajanOmics Laboratory, Byers Eye Institute, Stanford University, Palo Alto, CA, USA.
Stephen H TsangDepartment of Ophthalmology, Columbia University Medical Center, New York, NY, USA. sht2@cumc.columbia.edu.
Columbia University Irving Medical Center · USSmith-Kettlewell Eye Research Institute · USStanford University · USUniversity of Iowa · USVA Palo Alto Health Care System · US

Funding

Tumor Biology and Microenvironment ProgramP30CA013696 · NCI · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI Parisa Tehranifar · 1985 to 2026
$115.3M
Instrumentation, Fabrication, and Design CoreP30EY019007 · NEI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Xin Zhang · 2010 to 2026
$12.9M
Translational Gene Therapy for CNGB1 Retinitis PigmentosaR24EY027285 · NEI · MICHIGAN STATE UNIVERSITY · PI HAUSWIRTH, WILLIAM W, MICHALAKIS, STYLIANOS · 2018 to 2022
$8.6M
Toward mechanism- and gene-based therapies for retinal degenerationR01EY018213 · NEI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Stephen H Tsang · 2008 to 2026
$6.6M
Gene Silencing and Gene Editing in PhototransductionR01EY024698 · NEI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Stephen H Tsang · 2015 to 2026
$4.7M
Mechanistic Studies on Regenerative Medicine Approaches to Childhood BlindnessR01EY026682 · NEI · UNIVERSITY OF IOWA · PI BASSUK, ALEXANDER G, MAHAJAN, VINIT B · 2016 to 2019
$1.6M
Precision genome surgery in autologous stem cell transplantU01EY030580 · NEI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI SPARROW, JANET RUTHE, TSANG, STEPHEN H · 2019 to 2020
$810k
NCI NIH HHS 5P30CA013696NIH HHS P30EY019007NIH HHS R01EY018213NIH HHS R01EY024698NIH HHS R01EY026682NIH HHS R24EY027285NIH HHS U01EY030580
6 · The paper itself

Abstract

backgroundMutations in the Kelch-like protein 7 (KLHL7) represent a recently described and, to date, poorly characterized etiology of inherited retinal dystrophy. Dominant mutations in KLHL7 are a cause of isolated, non-syndromic retinitis pigmentosa (RP). In contrast, recessive loss-of-function mutations are known to cause Crisponi or Bohring-Opitz like cold induced sweating syndrome-3 (BOS-3). In this study, the phenotype and progression of five unrelated patients with KLHL7 mediated autosomal dominant RP (adRP) are characterized. Clinical evaluation of these patients involved a complete ophthalmic exam, full-field electroretinography (ffERG), and imaging, including fundus photography, spectral domain optical coherence tomography (SD-OCT), short wavelength fundus autofluorescence (SW-AF), and near-infrared fundus autofluorescence (NIR-AF). Molecular diagnoses were performed using whole-exome sequencing or gene panel testing. Disease progression was monitored in three patients with available data for a mean follow up time of 4.5 ± 2.9 years. Protein modeling was performed for all variants found in this study in addition to those documented in the literature for recessive loss-of-function alleles causing Crisponi or Bohring-Opitz like cold-induced sweating syndrome.

resultsGenetic testing in three patients identified two novel variants within the 3-box motif of the BACK domain: c.472 T > C:p.(Cys158Arg) and c.433A > T:p.(Asn145Tyr). Clinical imaging demonstrated hyperautofluorescent ring formation on both SW-AF and NIR-AF in three patients, with diffuse peripheral and peripapillary atrophy seen in all but one case. SD-OCT demonstrated a phenotypic spectrum, from parafoveal atrophy of the outer retina with foveal sparing to widespread retinal thinning and loss of photoreceptors. Incidence of cystoid macular edema was high with four of five patients affected. Protein modeling of dominant alleles versus recessive loss-of-function alleles showed dominant alleles localized to the BTB and BACK domains while recessive alleles were found in the Kelch domain.

conclusionsWe report the phenotype in five patients with KLHL7 mediated adRP, two novel coding variants, and imaging biomarkers using SW-AF and NIR-AF. These findings may influence future gene-based therapies for adRP and pave the way for mechanistic studies that elucidate the pathogenesis of KLHL7-mediated RP.

Indexed as

AdultAgedAutoantigensFemaleHumansMaleMiddle AgedMutationPedigreeProtein Structure, SecondaryRetinal DystrophiesRetinitis PigmentosaTomography, Optical CoherenceAutoantigensKLHL7 protein, humanAutosomal dominantInherited retinal dystrophyKelchKelch-like protein 7Retinitis pigmentosa

Identifiers

PMID31856884
PMCPMC6924004
OpenAlexW2995150672

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.