ArticleBMC genomics2019
Knowledge Base Commons (KBCommons) v1.1: a universal framework for multi-omics data integration and biological discoveries.
Article in BMC genomics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
11 citing papers in PubMed.
- SorghumHub: featuring the next phase for the KBCommons web portal with new molecular biology features.BMC genomics · 2026Article
- Elucidating the Mechanisms of SA-4-1BBL-Mediated Cancer Immunoprevention Through Advanced Informatics Approaches.Biomolecules · 2026Article
- Anti-EGFR aptamer exhibits direct anti-cancer effects in NSCLC cells harboring EGFR L858R mutations.NPJ precision oncology · 2024Article
- FatPlants: a comprehensive information system for lipid-related genes and metabolic pathways in plants.Database : the journal of biological databases and curation · 2024Article
- A pipeline for sample tagging of whole genome bisulfite sequencing data using genotypes of whole genome sequencing.BMC genomics · 2023Article
- The Allele Catalog Tool: a web-based interactive tool for allele discovery and analysis.BMC genomics · 2023Article
- Genomic Variations Explorer (GenVarX): a toolset for annotating promoter and CNV regions using genotypic and phenotypic differences.Frontiers in genetics · 2023Article
- Integration of multi-omics technologies for crop improvement: Status and prospects.Frontiers in bioinformatics · 2022Article
- Linkage analysis and residual heterozygotes derived near isogenic lines reveals a novel protein quantitative trait loci from aFrontiers in plant science · 2022Article
- Systematic Multi-Omics Integration (MOI) Approach in Plant Systems Biology.Frontiers in plant science · 2020Review
- State of the Field in Multi-Omics Research: From Computational Needs to Data Mining and Sharing.Frontiers in genetics · 2020Review
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
5 authors.
Funding
Abstract
backgroundKnowledge Base Commons (KBCommons) v1.1 is a universal and all-inclusive web-based framework providing generic functionalities for storing, sharing, analyzing, exploring, integrating and visualizing multiple organisms' genomics and integrative omics data. KBCommons is designed and developed to integrate diverse multi-level omics data and to support biological discoveries for all species via a common platform.
methodsKBCommons has four modules including data storage, data processing, data accessing, and web interface for data management and retrieval. It provides a comprehensive framework for new plant-specific, animal-specific, virus-specific, bacteria-specific or human disease-specific knowledge base (KB) creation, for adding new genome versions and additional multi-omics data to existing KBs, and for exploring existing datasets within current KBs.
resultsKBCommons has an array of tools for data visualization and data analytics such as multiple gene/metabolite search, gene family/Pfam/Panther function annotation search, miRNA/metabolite/trait/SNP search, differential gene expression analysis, and bulk data download capacity. It contains a highly reliable data privilege management system to make users' data publicly available easily and to share private or pre-publication data with members in their collaborative groups safely and securely. It allows users to conduct data analysis using our in-house developed workflow functionalities that are linked to XSEDE high performance computing resources. Using KBCommons' intuitive web interface, users can easily retrieve genomic data, multi-omics data and analysis results from workflow according to their requirements and interests.
conclusionsKBCommons addresses the needs of many diverse research communities to have a comprehensive multi-level OMICS web resource for data retrieval, sharing, analysis and visualization. KBCommons can be publicly accessed through a dedicated link for all organisms at http://kbcommons.org/.
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What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.