Evidence map›Paper›PMID 31855287›Full record

ArticleMedical physics2020

A 3D deep convolutional neural network approach for the automated measurement of cerebellum tracer uptake in FDG PET-CT scans.

Xiaofan Xiong, Timothy J Linhardt, Weiren Liu, Brian J Smith, Wenqing Sun, Christian Bauer, John J Sunderland, Michael M Graham, John M Buatti, Reinhard R Beichel

Abstract read
In one paragraph

Article in Medical physics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

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4 · The record

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5 · Who and what money

Authors and funding

10 authors.

Xiaofan XiongDepartment of Biomedical Engineering, The University of Iowa, Iowa City, IA, 52242, USA.
Timothy J LinhardtDepartment of Electrical and Computer Engineering, The University of Iowa, Iowa City, IA, 52242, USA.
Weiren LiuRoy J. and Lucille A. Carver College of Medicine, The University of Iowa, Iowa City, IA, 52242, USA.
Brian J SmithDepartment of Biostatistics, The University of Iowa, Iowa City, IA, 52242, USA.
Wenqing SunDepartment of Radiation Oncology, University of Iowa Hospitals and Clinics, Iowa City, IA, 52242, USA.
Christian BauerDepartment of Electrical and Computer Engineering, The University of Iowa, Iowa City, IA, 52242, USA.
John J SunderlandDepartment of Radiology, The University of Iowa, Iowa City, IA, 52242, USA.
Michael M GrahamDepartment of Radiology, The University of Iowa, Iowa City, IA, 52242, USA.
John M BuattiDepartment of Radiation Oncology, University of Iowa Hospitals and Clinics, Iowa City, IA, 52242, USA.
Reinhard R BeichelDepartment of Electrical and Computer Engineering, The University of Iowa, Iowa City, IA, 52242, USA.

Funding

Graph-Based Medical Image Segmentation in 3D and 4DR01EB004640 · NIBIB · UNIVERSITY OF IOWA · PI BUATTI, JOHN M, SONKA, MILAN · 2006 to 2022
$6.1M
Quantitative Imaging to Assess Response in Cancer Therapy TrialsU01CA140206 · NCI · UNIVERSITY OF IOWA · PI BUATTI, JOHN M, CASAVANT, THOMAS L. · 2010 to 2019
$5.8M
NCI NIH HHS U01 CA140206NIBIB NIH HHS R01 EB004640NIH/NCI U01CA140206
6 · The paper itself

Abstract

purposeThe purpose of this work was to assess the potential of deep convolutional neural networks in automated measurement of cerebellum tracer uptake in F-18 fluorodeoxyglucose (FDG) positron emission tomography (PET) scans.

methodsThree different three-dimensional (3D) convolutional neural network architectures (U-Net, V-Net, and modified U-Net) were implemented and compared regarding their performance in 3D cerebellum segmentation in FDG PET scans. For network training and testing, 134 PET scans with corresponding manual volumetric segmentations were utilized. For segmentation performance assessment, a fivefold cross-validation was used, and the Dice coefficient as well as signed and unsigned distance errors were calculated. In addition, standardized uptake value (SUV) uptake measurement performance was assessed by means of a statistical comparison to an independent reference standard. Furthermore, a comparison to a previously reported active-shape-model-based approach was performed.

resultsOut of the three convolutional neural networks investigated, the modified U-Net showed significantly better segmentation performance. It achieved a Dice coefficient of 0.911 ± 0.026, a signed distance error of 0.220 ± 0.103 mm, and an unsigned distance error of 1.048 ± 0.340 mm. When compared to the independent reference standard, SUV uptake measurements produced with the modified U-Net showed no significant error in slope and intercept. The estimated reduction in total SUV measurement error was 95.1%.

conclusionsThe presented work demonstrates the potential of deep convolutional neural networks in automated SUV measurement of reference regions. While it focuses on the cerebellum, utilized methods can be generalized to other reference regions like the liver or aortic arch. Future work will focus on combining lesion and reference region analysis into one approach.

Indexed as

Neural Networks, ComputerPositron Emission Tomography Computed TomographyAutomationBiological TransportCerebellumFluorodeoxyglucose F18HumansImaging, Three-DimensionalFluorodeoxyglucose F18cerebellum segmentationdeep convolutional neural networkspositron emission tomography

Identifiers

PMID31855287
PMCPMC7067677

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.