Evidence map›Paper›PMID 31855179›Full record

ArticleeLife2019

Common activation mechanism of class A GPCRs.

Qingtong Zhou, Dehua Yang, Meng Wu, Yu Guo, Wanjing Guo, Li Zhong, Xiaoqing Cai, Antao Dai, Wonjo Jang, Eugene I Shakhnovich and 6 more

Open access · goldAbstract read
In one paragraph

Article in eLife, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 358 papers.

0numbers the graph read from it
0cells of the map it votes in
358citing papers in PubMed
20.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

358 citing papers in PubMed, 646 citations in OpenAlex.

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298 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 5 institutions in 3 countries.

Qingtong Zhou *iHuman Institute, ShanghaiTech University, Shanghai, China.ORCID 0000-0001-8124-3079
Dehua Yang *The CAS Key Laboratory of Receptor Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, Shanghai, China.ORCID 0000-0003-3028-3243
Meng WuiHuman Institute, ShanghaiTech University, Shanghai, China.
Yu GuoiHuman Institute, ShanghaiTech University, Shanghai, China.
Wanjing GuoThe CAS Key Laboratory of Receptor Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, Shanghai, China.
Li ZhongThe CAS Key Laboratory of Receptor Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, Shanghai, China.
Xiaoqing CaiThe CAS Key Laboratory of Receptor Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, Shanghai, China.
Antao DaiThe CAS Key Laboratory of Receptor Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, Shanghai, China.
Wonjo JangDepartment of Pharmacology and Toxicology, Medical College of Georgia, Augusta University, Augusta, United States.
Eugene I ShakhnovichDepartment of Chemistry and Chemical Biology, Harvard University, Cambridge, United States.ORCID 0000-0002-4769-2265
Zhi-Jie LiuiHuman Institute, ShanghaiTech University, Shanghai, China.ORCID 0000-0001-7279-2893
Raymond C StevensiHuman Institute, ShanghaiTech University, Shanghai, China.
Nevin A LambertDepartment of Pharmacology and Toxicology, Medical College of Georgia, Augusta University, Augusta, United States.ORCID 0000-0001-7550-0921
M Madan BabuMRC Laboratory of Molecular Biology, Cambridge, United Kingdom.
Ming-Wei WangThe CAS Key Laboratory of Receptor Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, Shanghai, China.
Suwen ZhaoiHuman Institute, ShanghaiTech University, Shanghai, China.ORCID 0000-0001-5609-434X
Chinese Academy of Sciences · CNShanghaiTech University · CNAugusta University · USHarvard University · USMRC Laboratory of Molecular Biology · GB

Funding

Direct assessment of GPCR-transducer coupling and G protein subtype biasR01GM130142 · NIGMS · AUGUSTA UNIVERSITY · PI LAMBERT, NEVIN ALAN · 2018 to 2021
$1.5M
Medical Research Council MC_U105185859National Key R&D Program of China 2016YFC0905900National Key R&D Program of China 2018YFA0507000National Mega R&D Program for Drug Discovery 2018ZX09711002-002-005National Mega R&D Program for Drug Discovery 2018ZX09735-001National Natural Science Foundation of China 21704064National Natural Science Foundation of China 31971178National Natural Science Foundation of China 81573479National Natural Science Foundation of China 81773792National Natural Science Foundation of China 81872915NIGMS NIH HHS GM130142NIGMS NIH HHS R01 GM130142Novo Nordisk-CAS Research NNCAS-2017-1-CCShanghai Science and Technology Development Fund 16ZR1407100Shanghai Science and Technology Development Fund 16ZR1448500
6 · The paper itself

Abstract

Class A G-protein-coupled receptors (GPCRs) influence virtually every aspect of human physiology. Understanding receptor activation mechanism is critical for discovering novel therapeutics since about one-third of all marketed drugs target members of this family. GPCR activation is an allosteric process that couples agonist binding to G-protein recruitment, with the hallmark outward movement of transmembrane helix 6 (TM6). However, what leads to TM6 movement and the key residue level changes of this movement remain less well understood. Here, we report a framework to quantify conformational changes. By analyzing the conformational changes in 234 structures from 45 class A GPCRs, we discovered a common GPCR activation pathway comprising of 34 residue pairs and 35 residues. The pathway unifies previous findings into a common activation mechanism and strings together the scattered key motifs such as CWxP, DRY, Na

Indexed as

Protein ConformationAllosteric RegulationAmino Acid MotifsBinding SitesHumansLigandsProtein BindingReceptors, G-Protein-CoupledSignal TransductionLigandsReceptors, G-Protein-Coupledactivation mechanismallosterycomputational biologydrug discoverygenetic diseasesGPCRhumanmolecular biophysicssignal transductionstructural biologysystems biology

Identifiers

PMID31855179
PMCPMC6954041
OpenAlexW2996405687

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.