Evidence map›Paper›PMID 31854111›Full record

ArticleThe New phytologist2020

HOS15 and HDA9 negatively regulate immunity through histone deacetylation of intracellular immune receptor NLR genes in Arabidopsis.

Leiyun Yang, Xiangsong Chen, Zhixue Wang, Qi Sun, Anna Hong, Aiqin Zhang, Xuehua Zhong, Jian Hua

Open access · bronzeAbstract read
In one paragraph

Article in The New phytologist, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed, 1 pooled it
9.3field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 1 synthesis or guideline pooled it, 82 citations in OpenAlex.

  1. Pooled it
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  11. TaHSP18.6 and TaSRT1 interact to confer resistance toProceedings of the National Academy of Sciences of the United States of America · 2025
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  18. Overexpression of the potatoFrontiers in plant science · 2024
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Leiyun YangPlant Biology Section, School of Integrative Plant Science, Cornell University, Ithaca, NY, 14853, USA.ORCID 0000-0002-1313-2630
Xiangsong ChenLaboratory of Genetics, University of Wisconsin-Madison, Madison, WI, 53706, USA.ORCID 0000-0003-4311-8001
Zhixue WangPlant Biology Section, School of Integrative Plant Science, Cornell University, Ithaca, NY, 14853, USA.
Qi SunCornell Computational Biology Service Unit, Cornell University, Ithaca, NY, 14853, USA.ORCID 0000-0001-6140-2204
Anna HongPlant Biology Section, School of Integrative Plant Science, Cornell University, Ithaca, NY, 14853, USA.
Aiqin ZhangPlant Biology Section, School of Integrative Plant Science, Cornell University, Ithaca, NY, 14853, USA.
Xuehua ZhongLaboratory of Genetics, University of Wisconsin-Madison, Madison, WI, 53706, USA.ORCID 0000-0002-2350-0046
Jian HuaPlant Biology Section, School of Integrative Plant Science, Cornell University, Ithaca, NY, 14853, USA.ORCID 0000-0002-3777-3344
Cornell University · USUniversity of Wisconsin–Madison · US

Funding

Uncovering the epigenetic codes for genome integrity, developmental and environmental interaction.R35GM124806 · NIGMS · WASHINGTON UNIVERSITY · PI XUEHUA ZHONG · 2017 to 2026
$4.2M
NIGMS NIH HHS R35 GM124806
6 · The paper itself

Abstract

Plant immune responses need to be tightly controlled for growth-defense balance. The mechanism underlying this tight control is not fully understood. Here we identify epigenetic regulation of nucleotide-binding leucine rich repeat or Nod-Like Receptor (NLR) genes as an important mechanism for immune responses. Through a sensitized genetic screen and molecular studies, we identified and characterized HOS15 and its associated protein HDA9 as negative regulators of immunity and NLR gene expression. The loss-of-function of HOS15 or HDA9 confers enhanced resistance to pathogen infection accompanied with increased expression of one-third of the 207 NLR genes in Arabidopsis thaliana. HOS15 and HDA9 are physically associated with some of these NLR genes and repress their expression likely through reducing the acetylation of H3K9 at these loci. In addition, these NLR genes are repressed by HOS15 under both pathogenic and nonpathogenic conditions but by HDA9 only under infection condition. Together, this study uncovers a previously uncharacterized histone deacetylase complex in plant immunity and highlights the importance of epigenetic regulation of NLR genes in modulating growth-defense balance.

Indexed as

ArabidopsisHistone DeacetylasesArabidopsis ProteinsChromosomal Proteins, Non-HistoneEpigenesis, GeneticGene Expression Regulation, PlantHistonesNLR ProteinsPlant ImmunityArabidopsis ProteinsChromosomal Proteins, Non-HistoneHDA9 protein, ArabidopsisHistone DeacetylasesHistonesHos15 protein, ArabidopsisNLR ProteinsArabidopsis thalianaHDA9histone deacetylationHOS15NLR genesplant immunity

Identifiers

PMID31854111
PMCPMC7080574
OpenAlexW2996017637

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.