Evidence map›Paper›PMID 31854058›Full record

ArticleAngewandte Chemie (International ed. in English)2020

An Activity-Based Sensing Approach for the Detection of Cyclooxygenase-2 in Live Cells.

Anuj K Yadav, Christopher J Reinhardt, Andres S Arango, Hannah C Huff, Liang Dong, Michael G Malkowski, Aditi Das, Emad Tajkhorshid, Jefferson Chan

Open access · greenAbstract read
In one paragraph

Article in Angewandte Chemie (International ed. in English), 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
6.3field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 52 citations in OpenAlex.

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  14. Lessons in Organic Fluorescent Probe Discovery.Chembiochem : a European journal of chemical biology · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Anuj K YadavDepartment of Chemistry, Beckman Institute for Advanced Science and Technology, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA.ORCID 0000-0002-4736-4392
Christopher J ReinhardtDepartment of Chemistry, Beckman Institute for Advanced Science and Technology, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA.ORCID 0000-0001-9992-1253
Andres S ArangoCenter for Biophysics and Quantitative Biology, Department of Biochemistry, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA.ORCID 0000-0003-2278-3619
Hannah C HuffDepartment of Chemistry, Beckman Institute for Advanced Science and Technology, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA.
Liang DongDepartment of Structural Biology, Jacobs School of Medicine and Biomedical Sciences, University at Buffalo, Buffalo, NY, 14203, USA.
Michael G MalkowskiDepartment of Structural Biology, Jacobs School of Medicine and Biomedical Sciences, University at Buffalo, Buffalo, NY, 14203, USA.
Aditi DasCenter for Biophysics and Quantitative Biology, Department of Biochemistry, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA.ORCID 0000-0002-6731-6726
Emad TajkhorshidDepartment of Chemistry, Beckman Institute for Advanced Science and Technology, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA.ORCID 0000-0001-8434-1010
Jefferson ChanDepartment of Chemistry, Beckman Institute for Advanced Science and Technology, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA.ORCID 0000-0003-4139-4379
University of Illinois Urbana-Champaign · USUniversity at Buffalo, State University of New York · US

Funding

WHOLE CELL SIMULATIONP41GM104601 · NIGMS · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI TAJKHORSHID, EMAD · 2012 to 2021
$19.0M
Training Program in Chemistry-Interface with BiologyT32GM070421 · NIGMS · UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGN · PI HERGENROTHER, PAUL · 2005 to 2019
$5.4M
Toolkit for High-Resolution Structure and Dynamics of Functional LipidsR01GM123455 · NIGMS · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI MORRISSEY, JAMES H., RIENSTRA, CHAD M · 2016 to 2020
$5.0M
Training Program at the Chemistry Biology InterfaceT32GM136629 · NIGMS · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI Paul Hergenrother · 2020 to 2026
$4.5M
Chemical Tools to Study the Role of Biological AldehydesR35GM133581 · NIGMS · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI Jefferson Chan · 2019 to 2026
$3.1M
Biochemical Mechanism of Eicosanoid Synthesizing EnzymesR01GM115584 · NIGMS · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI DAS, ADITI · 2017 to 2022
$1.7M
Structure and Dynamics of Cyclooxygenase Catalysis and InhibitionR01GM115386 · NIGMS · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI MALKOWSKI, MICHAEL G · 2015 to 2018
$1.5M
NIGMS NIH HHS P41 GM104601NIGMS NIH HHS R01 GM115386NIGMS NIH HHS R01 GM115584NIGMS NIH HHS R01 GM123455NIGMS NIH HHS R35 GM133581NIGMS NIH HHS T32 GM070421NIGMS NIH HHS T32 GM136629NIH HHS P41GM104601NIH HHS R01GM115386NIH HHS R01GM1155884NIH HHS R01GM123455NIH HHS R03DA04236502NIH HHS R35GM133581NIH HHS T32GM070421
6 · The paper itself

Abstract

Cyclooxygenase-2 (COX-2) overexpression is prominent in inflammatory diseases, neurodegenerative disorders, and cancer. Directly monitoring COX-2 activity within its native environment poses an exciting approach to account for and illuminate the effect of the local environments on protein activity. Herein, we report the development of CoxFluor, the first activity-based sensing approach for monitoring COX-2 within live cells with confocal microscopy and flow cytometry. CoxFluor strategically links a natural substrate with a dye precursor to engage both the cyclooxygenase and peroxidase activities of COX-2. This catalyzes the release of resorufin and the natural product, as supported by molecular dynamics and ensemble docking. CoxFluor enabled the detection of oxygen-dependent changes in COX-2 activity that are independent of protein expression within live macrophage cells.

Indexed as

Biosensing TechniquesCyclooxygenase 2HumansMolecular Dynamics SimulationCyclooxygenase 2activity-based sensingbioimagingfluorescent probesisoform selectivitymolecular dynamics

Identifiers

PMID31854058
PMCPMC7416425
OpenAlexW2995250909

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.