ArticleRice (New York, N.Y.)2019
Genome-Wide Association Analysis of the Genetic Basis for Sheath Blight Resistance in Rice.
Article in Rice (New York, N.Y.), 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers, 1 of them a synthesis that pooled it.
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Who cites it
25 citing papers in PubMed, 1 synthesis or guideline pooled it, 44 citations in OpenAlex.
- Pooled it
- Quantitative resistance toFrontiers in plant science · 2026Article
- Genomic insights into sheath blight resistance: leveraging natural variation in the Bengal-Assam-Aus rice panel for multi-season association mapping.Frontiers in plant science · 2026Article
- Employing AlphaFold and TED to explore the structural impacts of stress-associated mutations in rice.Bioinformatics advances · 2026Article
- Low-call-rate SNPs and presence-absence variation identified in the rice pan-genome can improve genomic prediction of rice gene bank accessions.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025Article
- Natural variation in SBRR1 shows high potential for sheath blight resistance breeding in rice.Nature genetics · 2025Article
- Molecular Insights into Rice Immunity: Unveiling Mechanisms and Innovative Approaches to Combat Major Pathogens.Plants (Basel, Switzerland) · 2025Review
- The Role of Genetic Resistance in Rice Disease Management.International journal of molecular sciences · 2025Review
- Mining SNP loci and candidate genes for sheath blight resistance inFrontiers in plant science · 2025Article
- Candidate genes for alkali tolerance identified by genome-wide association study at the seedling stage in rice (Oryza sativa L.).Scientific reports · 2024Article
- Molecular Mapping and Transfer of Quantitative Trait Loci (QTL) for Sheath Blight Resistance from Wild RiceGenes · 2024Article
- Defining genomic landscape for identification of potential candidate resistance genes associated with major rice diseases through MetaQTL analysis.Journal of biosciences · 2024Article
- Superior haplotypes towards the development of blast and bacterial blight-resistant rice.Frontiers in plant science · 2024Article
- Dissecting genomic regions and underlying sheath blight resistance traits in rice (Plant direct · 2023Article
- Genome-Wide Association Study Identifies Resistance Loci for Bacterial Blight in a Collection of Asian TemperateInternational journal of molecular sciences · 2023Article
- Genome-wide association and epistasis studies reveal the genetic basis of saline-alkali tolerance at the germination stage in rice.Frontiers in plant science · 2023Article
- Deciphering environmental factors and defense response of rice genotypes against sheath blight disease.Physiological and molecular plant pathology · 2022Article
- Proteo-Molecular Investigation of Cultivated Rice, Wild Rice, and Barley Provides Clues of Defense Responses againstBioengineering (Basel, Switzerland) · 2022Article
- Assessment of Rice Sheath Blight Resistance Including Associations with Plant Architecture, as Revealed by Genome-Wide Association Studies.Rice (New York, N.Y.) · 2022Article
- Genome-Wide Association Study Identifies a Rice Panicle Blast Resistance Gene,International journal of molecular sciences · 2022Article
Corrections and comments
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Authors and funding
7 authors at 1 institution in 1 country.
Funding
Abstract
backgroundSheath blight (ShB), caused by Rhizoctonia solani Kühn, is one of the most destructive rice diseases. Developing ShB-resistant rice cultivars represents the most economical and environmentally sound strategy for managing ShB.
resultsTo characterize the genetic basis for ShB resistance in rice, we conducted association studies for traits related to ShB resistance, namely culm length (CL), lesion height (LH), and relative lesion height (RLH). Combined a single locus genome-wide scan and a multi-locus method using 2,977,750 single-nucleotide polymorphisms to analyse 563 rice accessions, we detected 134, 562, and 75 suggestive associations with CL, LH, and RLH, respectively. The adjacent signals associated with RLH were merged into 27 suggestively associated loci (SALs) based on the estimated linkage disequilibrium blocks. More than 44% of detected RLH-SALs harboured multiple QTLs/genes associated with ShB resistance, while the other RLH-SALs were putative novel ShB resistance loci. A total of 261 ShB resistance putative functional genes were screened from 23 RLH-SALs according to bioinformatics and haplotype analyses. Some of the annotated genes were previously reported to encode defence-related and pathogenesis-related proteins, suggesting that quantitative resistance to ShB in rice is mediated by SA- and JA-dependent signalling pathways.
conclusionsOur findings may improve the application of germplasm resources as well as knowledge-based ShB management and the breeding of ShB-resistant rice cultivars.
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